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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma7g09364 ATGAGTCCACCGCACAACGTATTATTAACTCCTCTTCCTCCTCTGGTACAAATATTTATTAAGGGTCTAAAAGTAAAAATGGACGCGGAACCTGCCAAGACCTCGTCTCCTGTTAAAGACGTGGATGTAGAAGCATCTGTCCCTGTAGACAACGGACATGATAAAGTTGCTCAAGAACAAGACGCATCTTCCAAGTTCTCGGTTTCTAGCATAAGCACATGGGCGAAAAGTTTGAAACTTCCTCAACCTTTAGGAGGCACACAAGCCGAGTCTTCGTCATCTGAAAACACTGGAAAATCGTCTTTTTCGCGTCTGACTAGTGGGCTTGCGTTGAAGTTATCTCCAAAGGCTTCCCAAGAGATTGATAGTCCCGACGAAGCTCCAAAAACGCCACAAGGTGGCTTCATTGGGACCATCACTAAAGGTTTTGTCGACACTTCTAAAAATGCAGTGAAGGCTGTGCAAGTAAAGGCTCGTCATGTTGTATCACAAAACAAACGAAGATATCAGGAAGGAGGATTTGATTTAGATATGACGTACATCACTGAAAATATAATTGCAATGGGATTCCCTGCTGGTGATATGAGCTCAGGTTTCTTTGGATACGTGGAGGGATTTTACCGTAACCAAATGGAGGAAGTAATCAAGTTCTTTGAAACCAATCACAAGGACAAGTACAAGGTTTACAATCTATGCTCAGAGAGGCTATATGATGCATCACTGTTTGAAGGAAAGGTTGCTTGTTTCCCCTTTGATGATCACAATTGTCCTCCGATTCAACTGATCATATCATTTTGCCATAGTGCCTACTCATGGTTGAAAGAGGACATAGAGAATGTTGTGGTTGTTCACTGTAAGGCCGGAATGGCAAGGACGGGCTTAATGATCACAAGTCTGCTTTTATTTCTAAAGTTTTTCCCTACAGCTGAGGAATCCATAGACTATTACAACCAAAAAAGATGCGTTGACGGGAAGGGACTTGTTCTCCCAAGTCAAATTAGATACGTCAAGTATTTTGAACGTGTTCTAACATACTTCAATGGAGAAGATCAACCTGGGCGCAGGTGTATGCTTAGAGGAATTCGCCTTCATAGGTGTCCTTATTGGATCAGACCATCTATTACTGTCTCAGATCATAACGGTGTTCTTTTTTCTACGAAAAAGCATCCCAGAACCAAGGACCTTTCTCCTGAAGATTTTTGGTTTGCTGCACCTAGAAAGGGTATAATGGTCTTTGCTCTGCCCGGGGAGCCCGGTCTGACAGAATTATCTGGAGATTTTAAGATTCAGTTTCATGACCGACAAGGAGACTTCTACTGTTGGCTGAACACAACAATGATGGAGAACAGGACAATCCTAACCACCAATGATCTTGACGGGTTTGACAAGAGGAAACTACCATCCCCAGGTTTTCAAGTAGAGGTGGTAGTTGTGGACTACGACCCCACATCTCAACCGAAACCGCAAACTGAAAGTACACCCAAACCAGCCGAGAGCACAACCACAACTCCCGCTCCACCTCCCCCCTCTGATACCACCTCTACCATACTGAAAGATTCTGCAACTACTGAAAAAGATGATGAGGTTTTCTCTGATAACGAGTCAACCGGAACCAATACTAATTCTAGCAAAATCGAAAATTTATCTGATAAAACCAAGAATATCTCTATATCAAATCCAGGATCCAAGCAGACCGACACCACCAATGAGCCCAAACAGAGCGGCCCGAACCCTATTGGTGAGGTAAGTGATTTTAAGGCAATGGCAGCAGATGCATCCGTGTTCACTTTTGGTGATGACGAAGACTATGAAAGCGACTGA 1821 43.44 MSPPHNVLLTPLPPLVQIFIKGLKVKMDAEPAKTSSPVKDVDVEASVPVDNGHDKVAQEQDASSKFSVSSISTWAKSLKLPQPLGGTQAESSSSENTGKSSFSRLTSGLALKLSPKASQEIDSPDEAPKTPQGGFIGTITKGFVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNQMEEVIKFFETNHKDKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIISFCHSAYSWLKEDIENVVVVHCKAGMARTGLMITSLLLFLKFFPTAEESIDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGEDQPGRRCMLRGIRLHRCPYWIRPSITVSDHNGVLFSTKKHPRTKDLSPEDFWFAAPRKGIMVFALPGEPGLTELSGDFKIQFHDRQGDFYCWLNTTMMENRTILTTNDLDGFDKRKLPSPGFQVEVVVVDYDPTSQPKPQTESTPKPAESTTTTPAPPPPSDTTSTILKDSATTEKDDEVFSDNESTGTNTNSSKIENLSDKTKNISISNPGSKQTDTTNEPKQSGPNPIGEVSDFKAMAADASVFTFGDDEDYESD 606
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma7g09364 606 ProSitePatterns Tyrosine specific protein phosphatases active site. 283 293 IPR016130 GO:0016311(InterPro)
Chma7g09364 606 MobiDBLite consensus disorder prediction 533 576 - -
Chma7g09364 606 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 281 320 IPR000387 GO:0016311(InterPro)
Chma7g09364 606 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 154 569 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Chma7g09364 606 SUPERFAMILY C2 domain (Calcium-lipid-binding domain, CaLB) 423 477 IPR035892 -
Chma7g09364 606 ProSiteProfiles C2 tensin-type domain profile. 353 480 IPR014020 -
Chma7g09364 606 MobiDBLite consensus disorder prediction 46 60 - -
Chma7g09364 606 Pfam PTEN2, C2 domain 353 481 - -
Chma7g09364 606 CDD PTP-PTEN 177 341 IPR045101 GO:0016791(InterPro)
Chma7g09364 606 MobiDBLite consensus disorder prediction 483 499 - -
Chma7g09364 606 MobiDBLite consensus disorder prediction 81 102 - -
Chma7g09364 606 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 152 349 - -
Chma7g09364 606 MobiDBLite consensus disorder prediction 84 102 - -
Chma7g09364 606 Gene3D - 354 480 - -
Chma7g09364 606 Gene3D Protein tyrosine phosphatase superfamily 152 349 IPR029021 -
Chma7g09364 606 ProSiteProfiles Phosphatase tensin-type domain profile. 167 346 IPR029023 -
Chma7g09364 606 SMART PTEN-C2-2 351 479 IPR014020 -
Chma7g09364 606 MobiDBLite consensus disorder prediction 29 65 - -
Chma7g09364 606 MobiDBLite consensus disorder prediction 115 134 - -
Chma7g09364 606 MobiDBLite consensus disorder prediction 481 586 - -
Chma7g09364 606 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 180 347 IPR029021 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma7g09364 K01110 phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr3:125966264 Chma7g09364 Chma-Chr7:311859655 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chma7g04669 . 180 243 Protein tyrosine phosphatase (PTP) family AT5G23720 75.0 1.35e-23 102.0
Chma6g02245 . 16 176 Protein tyrosine phosphatase (PTP) family AT1G05000 46.296 5.04e-36 124.0
Chma4g04894 . 90 182 Protein tyrosine phosphatase (PTP) family AT3G23610 41.935 4.20e-19 81.3
Chma9g01894 . 52 647 Protein tyrosine phosphatase (PTP) family AT5G01290 52.472 0.0 610.0
Chma4g09395 . 348 386 Protein tyrosine phosphatase (PTP) family AT3G10550 64.103 3.03e-09 54.3
Chma4g08139 . 1 912 Protein tyrosine phosphatase (PTP) family AT5G23720 63.508 0.0 1117.0
Chma5g05226 . 180 236 Protein tyrosine phosphatase (PTP) family AT5G23720 71.93 1.03e-21 90.5
Chma2g06551 . 125 204 Protein tyrosine phosphatase (PTP) family AT3G52180 52.5 4.97e-26 97.4
Chma4g07946 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 6.10e-07 48.9
Chma8g07239 . 74 214 Protein tyrosine phosphatase (PTP) family AT5G56610 31.469 4.23e-09 53.5
Chma0g00423 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 58.235 2.46e-72 214.0
Chma6g05660 . 260 295 Protein tyrosine phosphatase (PTP) family AT5G04540 45.455 7.53e-06 45.8
Chma7g08450 . 55 207 Protein tyrosine phosphatase (PTP) family AT1G05000 80.392 2.28e-95 274.0
Chma5g06670 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 54.745 1.52e-96 281.0
Chma5g00531 . 60 207 Protein tyrosine phosphatase (PTP) family AT5G56610 76.351 9.56e-83 244.0
Chma9g01189 . 250 644 Protein tyrosine phosphatase (PTP) family AT5G01290 53.317 2.11e-133 400.0
Chma5g05552 . 344 423 Protein tyrosine phosphatase (PTP) family AT5G01290 50.495 7.97e-24 95.5
Chma2g06211 . 34 378 Protein tyrosine phosphatase (PTP) family AT3G52180 52.89 1.18e-119 347.0
Chma5g04093 . 65 330 Protein tyrosine phosphatase (PTP) family AT1G71860 48.327 1.76e-85 256.0
Chma2g00880 . 6 186 Protein tyrosine phosphatase (PTP) family AT3G02800 67.956 3.44e-89 258.0
Chma5g01763 . 1 392 Protein tyrosine phosphatase (PTP) family AT5G58160 59.391 3.29e-166 520.0
Chma8g08234 . 19 840 Protein tyrosine phosphatase (PTP) family AT3G10550 64.685 0.0 1111.0
Chma5g04855 . 66 186 Protein tyrosine phosphatase (PTP) family AT3G23610 38.843 1.62e-18 81.3
Chma8g01935 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 34.568 1.33e-22 90.5
Chma8g06872 . 480 545 Protein tyrosine phosphatase (PTP) family AT5G01290 66.667 7.24e-23 94.7
Chma1g08431 . 26 307 Protein tyrosine phosphatase (PTP) family AT2G35320 54.266 3.51e-116 335.0
Chma3g02040 . 281 333 Protein tyrosine phosphatase (PTP) family AT3G52180 54.717 1.95e-14 69.3
Chma9g06972 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 34.524 3.16e-06 46.2
Chma6g02248 . 16 203 Protein tyrosine phosphatase (PTP) family AT1G05000 62.234 8.31e-81 239.0
Chma0g02587 . 135 268 Protein tyrosine phosphatase (PTP) family AT5G23720 66.418 5.12e-46 167.0
Chma6g09372 . 459 546 Protein tyrosine phosphatase (PTP) family AT3G01510 37.079 4.40e-07 50.4
Chma5g08412 . 270 305 Protein tyrosine phosphatase (PTP) family AT5G04540 80.556 2.99e-14 67.0
Chma5g04876 . 58 313 Protein tyrosine phosphatase (PTP) family AT1G71860 66.923 1.73e-127 367.0
Chma5g08358 . 895 1102 Protein tyrosine phosphatase (PTP) family AT5G58160 52.857 8.71e-61 208.0
Chma1g09479 . 155 223 Protein tyrosine phosphatase (PTP) family AT3G10940 79.71 1.38e-36 122.0
Chma4g03566 . 67 378 Protein tyrosine phosphatase (PTP) family AT3G52180 66.454 5.89e-155 439.0
Chma0g00713 . 125 204 Protein tyrosine phosphatase (PTP) family AT3G52180 51.25 7.73e-26 97.1
Chma1g00482 . 294 440 Protein tyrosine phosphatase (PTP) family AT3G10550 70.748 4.94e-60 201.0
Chma7g09364 . 41 611 Protein tyrosine phosphatase (PTP) family AT3G19420 69.808 0.0 806.0
Chma2g04615 . 164 257 Protein tyrosine phosphatase (PTP) family AT3G09100 46.809 2.20e-20 90.5
Chma2g06244 . 151 840 Protein tyrosine phosphatase (PTP) family AT3G10550 57.241 0.0 813.0
Chma7g06365 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 58.866 0.0 767.0
Chma9g09338 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 53.21 0.0 694.0
Chma7g00239 . 43 210 Protein tyrosine phosphatase (PTP) family AT1G05000 60.0 7.25e-74 221.0
Chma8g01781 . 41 228 Protein tyrosine phosphatase (PTP) family AT3G52180 51.269 4.13e-55 179.0
Chma5g05103 . 107 185 Protein tyrosine phosphatase (PTP) family AT3G09100 46.988 4.74e-16 75.1
Chma3g01002 . 222 260 Protein tyrosine phosphatase (PTP) family AT5G23720 71.795 1.85e-10 57.4
Chma5g05228 . 92 228 Protein tyrosine phosphatase (PTP) family AT3G10940 67.883 3.97e-62 197.0
Chma4g08134 . 1 356 Protein tyrosine phosphatase (PTP) family AT5G23720 63.298 1.25e-148 442.0
Chma9g01645 . 52 653 Protein tyrosine phosphatase (PTP) family AT5G01290 51.68 0.0 617.0
Chma5g08344 . 1 478 Protein tyrosine phosphatase (PTP) family AT5G58160 56.768 0.0 570.0
Chma1g10936 . 169 198 Protein tyrosine phosphatase (PTP) family AT5G01290 56.667 7.44e-06 40.0
Chma1g08434 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 54.125 4.00e-121 348.0
Chma8g02146 . 80 144 Protein tyrosine phosphatase (PTP) family AT5G56610 81.538 2.21e-32 110.0
Chma5g06390 . 246 291 Protein tyrosine phosphatase (PTP) family AT3G50110 50.0 4.45e-06 40.4
Chma6g03923 . 6 784 Protein tyrosine phosphatase (PTP) family AT3G55270 49.212 0.0 715.0
Chma5g09631 . 85 374 Protein tyrosine phosphatase (PTP) family AT3G09100 29.747 5.10e-37 135.0
Chma3g00743 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 58.235 2.46e-72 214.0
Chma4g01780 . 9 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.295 3.58e-86 253.0
Chma9g02876 . 121 215 Protein tyrosine phosphatase (PTP) family AT3G10940 71.579 6.67e-44 154.0
Chma1g03116 . 67 147 Protein tyrosine phosphatase (PTP) family AT3G52180 40.741 3.97e-09 49.3
Chma3g05665 . 72 462 Protein tyrosine phosphatase (PTP) family AT3G55270 56.716 8.27e-161 481.0
Chma6g05636 . 195 278 Protein tyrosine phosphatase (PTP) family AT3G09100 57.143 5.34e-27 106.0
Chma1g01253 . 265 323 Protein tyrosine phosphatase (PTP) family AT3G52180 40.984 8.56e-07 48.9
Chma7g00597 . 193 268 Protein tyrosine phosphatase (PTP) family AT5G23720 73.684 1.51e-30 114.0
Chma9g01171 . 67 644 Protein tyrosine phosphatase (PTP) family AT5G01290 54.132 0.0 603.0
Chma3g01751 . 132 236 Protein tyrosine phosphatase (PTP) family AT5G23720 53.571 1.65e-27 110.0
Chma5g01758 . 1 375 Protein tyrosine phosphatase (PTP) family AT5G58160 61.436 1.12e-164 521.0
Chma4g08135 . 376 912 Protein tyrosine phosphatase (PTP) family AT5G23720 62.107 0.0 653.0
Chma5g07612 . 21 190 Protein tyrosine phosphatase (PTP) family AT3G23610 58.235 3.57e-72 214.0
Chma3g02951 . 58 611 Protein tyrosine phosphatase (PTP) family AT3G19420 58.97 0.0 667.0
Chma9g01649 . 65 653 Protein tyrosine phosphatase (PTP) family AT5G01290 50.725 0.0 582.0
Chma5g09032 . 308 443 Protein tyrosine phosphatase (PTP) family AT3G10550 51.799 1.27e-29 114.0
Chma1g09460 . 171 217 Protein tyrosine phosphatase (PTP) family AT3G10940 82.979 8.33e-25 93.2
Chma4g04891 . 54 182 Protein tyrosine phosphatase (PTP) family AT3G23610 34.559 3.30e-20 84.0
Chma8g06353 . 1172 1240 Protein tyrosine phosphatase (PTP) family AT5G58160 46.377 1.10e-11 56.2
Chma3g05668 . 72 432 Protein tyrosine phosphatase (PTP) family AT3G55270 53.279 5.82e-132 394.0
Chma5g09630 . 515 589 Protein tyrosine phosphatase (PTP) family AT5G01290 61.842 7.48e-24 94.0
Chma2g04717 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 73.308 0.0 803.0
Chma8g01930 . 294 345 Protein tyrosine phosphatase (PTP) family AT5G01290 40.385 5.74e-06 44.7
Chma3g06722 . 358 412 Protein tyrosine phosphatase (PTP) family AT5G04540 87.273 1.69e-26 98.6
Chma6g07460 . 129 216 Protein tyrosine phosphatase (PTP) family AT3G10940 61.364 1.67e-30 120.0
Chma1g10271 . 188 392 Protein tyrosine phosphatase (PTP) family AT5G39400 44.66 1.47e-52 172.0
Chma2g04524 . 120 253 Protein tyrosine phosphatase (PTP) family AT5G23720 55.224 1.85e-31 128.0
Chma1g04451 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.913 2.29e-116 337.0
Chma2g08631 . 68 282 Protein tyrosine phosphatase (PTP) family AT3G10940 84.186 5.21e-141 393.0
Chma3g03242 . 1 395 Protein tyrosine phosphatase (PTP) family AT5G39400 55.528 1.56e-155 448.0
Chma5g08348 ACH 1202 1279 Protein tyrosine phosphatase (PTP) family AT5G58160 73.077 3.19e-34 120.0
Chma0g01780 . 169 198 Protein tyrosine phosphatase (PTP) family AT5G01290 56.667 7.15e-06 40.0
Chma2g06222 . 34 378 Protein tyrosine phosphatase (PTP) family AT3G52180 60.405 9.12e-151 427.0