AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chma8g08377 ATGGGTCTTCTAGATTCTCGTTTCTTGGTCACTTTTACAACAGAGGGAGCCATTTCGGGTTTGAAGATGTATGTTGTGGATAGCAGAGGAGGAGCAATAGTATGCATGCTGCTAGCACTCTTTTTTCTAGGAACATGGCCTGCCATTCTAACGTTGTTAGAAAGACGTGGCCGGCTTCCTCAACACACTTATCTTGATTACACAATCACCAATCTTCTGGCTGCTGTCATAATCGCATTTACATTTGGGGAATTCGGCCATACCAATGATGATATTCCCAATTTCCTAGTCCAGCTGTCACAAAATAATTGGCCGAGCGTTTTATTTGCAATGGGGGGCGGAGTGGTCTTAAGCCTCGGCAATCTTTCAACGCAATATGCATGGGCATTTGTCGGTTTATCAGTAACCTCAGTGATCTGCTCAAGTATTACCGTTGTTATAGGTACAACTTTGAACTACTTTTTAGACGACAGAATCAACAGGGCCGAGATACTTTTCCCAGGTGTTGCATGCTTCTTGGTTGCTGTTTGTTTCGGTTCTGTGGTGCATACATCCAACGCCAAAGATAATGAGGCAAAGCTTGATATAGTGGAAGATCCTCACATAGGCGGAAAAGGATCAGTTAGTCACGGAGTAGACACGAATTCAATAAAGGATTTGGAGTACGGATCTGCTAATGCAGGGAAGGCAAATACAGGAACTGCCAATTTTCTTATTCAGCTCGAGAGCAGAAGAGCAATCAAGGTGTTTGGGAAAAGTACCTTGACTGGTTTGGCCATATGTTTATTTTCGGGACTTTGTTGCTCTCTCTTCACACCGCTTTTTAATCTTGCAACGAATGACCAATGGCATACATTGGAGGATGGTGTCCCTCACTTAAGTGTCTACACAACGTTTTTCTACTTTTCTTGCTCGTGTTTTGTGATTGCGATAATCTTAAACATTACGTTCCTTTACCACCCAATGTTCAACTTGCCTCGATCTTCAATCAAGGCATATTTGAATGACTGGGACGGTCGAGGTTGGGCATTTCTGGCTGGTTTGTTGTGTGGTTTTGGGAATGGTCTCCAGTTTATGGGAGGCCAAGCTGCTGGTTATGCTGCAGCAGACGCAGTTCAGGCGCTTCCACTTGTGAGTACCTTTTGGGGTGTGCTCGTTTTTGGTGAATACCATAAATCATCAAGAAGAACATATGTACTTCTCATAGGCATGCTTTCCATGTTTGTTGTGGCTGTTGGACTTCTTATGGCGTCATCTGGACATCGAAAAATTAGTGACATTACCTTGAGATGA 1293 43.54 MGLLDSRFLVTFTTEGAISGLKMYVVDSRGGAIVCMLLALFFLGTWPAILTLLERRGRLPQHTYLDYTITNLLAAVIIAFTFGEFGHTNDDIPNFLVQLSQNNWPSVLFAMGGGVVLSLGNLSTQYAWAFVGLSVTSVICSSITVVIGTTLNYFLDDRINRAEILFPGVACFLVAVCFGSVVHTSNAKDNEAKLDIVEDPHIGGKGSVSHGVDTNSIKDLEYGSANAGKANTGTANFLIQLESRRAIKVFGKSTLTGLAICLFSGLCCSLFTPLFNLATNDQWHTLEDGVPHLSVYTTFFYFSCSCFVIAIILNITFLYHPMFNLPRSSIKAYLNDWDGRGWAFLAGLLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGVLVFGEYHKSSRRTYVLLIGMLSMFVVAVGLLMASSGHRKISDITLR 430
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chma8g08377 430 Pfam Ureide permease 63 418 IPR009834 GO:0016020(InterPro)|GO:0071705(InterPro)
Chma8g08377 430 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 23 423 IPR030189 GO:0005274(PANTHER)|GO:0015505(PANTHER)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0071705(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chma8g08377 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chma Chma-Chr8:314637633 Chma8g08377 Chma-Chr8:314703702 dispersed
Chma Chma-Chr8:314640839 Chma8g08377 Chma-Chr8:314703702 dispersed
Chma Chma-Chr8:314703702 Chma8g08379 Chma-Chr8:314708984 dispersed
Chma Chma-Chr8:314703702 Chma8g08378 Chma-Chr8:314707897 tandem