AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00194 ATGGGTGGGAATCTTTATTGGGTAAAAAATGATTTTGATGATGAGACTAAATTTGAAGGGGTTGTTGTGGTGTTTGTATGGGCTAGTTTTGTTGATGTTAAGGATTATGTGGAGCTTTATTCTTCTTTTGGATGGAATTCACTTGTTGTTGTCTCTGATTTTCTTAATCCATTTTTCCCTGAGAGAGCCACATCACTTGCTTTTTCAGTCATCAATGAACTTTTAGAGGAGTTGAGGGCTAGACCATGTCCGTTAGTCCTTGCATCCTTTTCTGGTGGTTCACAAGCTTGTATGTACAAGGTTTTTCAGATCATTGAAGGAACATGTGAAGCACATCTCAGTCTGGATGATAGTCGGTTAATCATGACATGTATATCCGGTCAAATGTACGATTCTGGTCCAGTTAATGTTACTGGTGATTTGGGTGCCCGGTTTGCTTTACATTCCTCCAACGTGCCTGGTTCGTCAAAGCTGGTATCAATGGTCGCAAAAGGCGTCACGTCTGGTCTCGATGCTCTATTCCTTACTAGATTTGGATCCCAACGCTCCGAGTACTGGCAAACACTCTACTCCTCAGTTGGTTTGGGAGCTCCGTTTCTGATATTATGTTCTGAAAGTGATGATCTTGCTCCATATCCAGTTGTATACACATTTGCTCAACAAGTGCAAGGACTAGGAGGACATGTTCGGCTTTTTGGATGGAAGGACTCTCCTCATGTCGGTCATTACAAGCACAATCCCACAGAGTACAGAGCAGCTGTAAGCGAATTCTTTGACCACTCTGTTTCAATATTCAACCAGAAACTACAACAACTTGCTGAGCGAACCGGCATGGAAGGTATGCACGATAAAATATGTGAATTAGTTTGCGACCTACAAAATGCTGCAGTTGACTCAAACCAGAGCCTTAGAAGAGTAGCAGTCGGACCAAATGACCACTTCTTCTTACCAAGCTCAGCTGAATATCAAAGCAGTAAAGAATCTGGATCGTTACAAGATGAGCAAAAAGAAAGAAAAGCTGTCCTTTTGGCAAGTCCACCGAGCCTAAATCCACACAGTGTTCTTGGTCAAGTCCTGTTTGATGTTTGTGTGCCTAAAAACATCGAAGGTTGGGATATCAAGTTTGATAATAGGAAGCCGTTTGGGTCTACTTCTAAGGGCTCATCGTTAAATCCCTTAAAACGCATGAGACGATCAAGATTATGA 1206 42.12 MGGNLYWVKNDFDDETKFEGVVVVFVWASFVDVKDYVELYSSFGWNSLVVVSDFLNPFFPERATSLAFSVINELLEELRARPCPLVLASFSGGSQACMYKVFQIIEGTCEAHLSLDDSRLIMTCISGQMYDSGPVNVTGDLGARFALHSSNVPGSSKLVSMVAKGVTSGLDALFLTRFGSQRSEYWQTLYSSVGLGAPFLILCSESDDLAPYPVVYTFAQQVQGLGGHVRLFGWKDSPHVGHYKHNPTEYRAAVSEFFDHSVSIFNQKLQQLAERTGMEGMHDKICELVCDLQNAAVDSNQSLRRVAVGPNDHFFLPSSAEYQSSKESGSLQDEQKERKAVLLASPPSLNPHSVLGQVLFDVCVPKNIEGWDIKFDNRKPFGSTSKGSSLNPLKRMRRSRL 401
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00194 401 SUPERFAMILY alpha-beta-Hydrolases 185 260 IPR029058 -
Chmo13g00194 401 PANTHER UNCHARACTERIZED 5 266 IPR008547 -
Chmo13g00194 401 Pfam Eukaryotic protein of unknown function (DUF829) 125 371 IPR008547 -
Chmo13g00194 401 SUPERFAMILY alpha-beta-Hydrolases 7 258 IPR029058 -
Chmo13g00194 401 Gene3D alpha-beta hydrolase 142 273 IPR029058 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00194 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
232206 Chmo13g00194 Chmo14g00263
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:7761597 Chmo15g00224 Chmo-Chr15:12368269 dispersed
Chmo Chmo-Chr3:14425159 Chmo13g00194 Chmo-Chr13:7761597 dispersed
Chmo Chmo-Chr13:7761597 Chmo14g00263 Chmo-Chr14:10872636 wgd
Chmo Chmo-Chr13:7761597 Chmo15g00223 Chmo-Chr15:12350971 wgd