AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00236 ATGGCTTTCAGATTTGCATCCTTGGTTCTTTTTCTTCATCTTCTTCATACGTTGATGCTTGTAGAAGGAGATGGAAGTAATGTCATAAGGCTCAACACCATGGATGATCACGGTCATGATGTCCGTCAAAATGACCACATGACACAAACTGGCCATGTGCATGGTCATGGTCATGGCCATCATTCGTCGTCGTCTACGAATCCAAAAGATCCTCAACTCATGGTTTTCTACATGCTAAAAGATCTAGAAGTAGGCAAAGTCATGCCAATTCACTTTCCAAACAGACATCTTTCACCGTCTCAACTCTTGTCCAAACAAGAAGCTGACAACATCCCCTTTTCGCTCACGGAATTACCAAACCTTCTTCGTATGTTCTCGTTCCGACAAGGCTCTCCACAAGCCATAGCCATGGAAAGCACACTTCAAGAATGTGAAGTCAAGCCAATCACGGGTGAAACAAAATTTTGTGCAACTTCTATGGAGTCTGTTCACGAATTTGCGCGTGACATCTTTGGATTCGACACTCAATTCATAACTATGACCACAACCCACCTTAAAAATCCACCGAGTGGACTTTTACAAAATTATAAAGTTATTGAGATCTCACAAAACATACCATCTCCAAAGCTAGTGGCTTGTCACACCATGCCATACCCATATGCAGTGTTCTATTGTCATAGCCAAGAAAGCGAGAACAAAGTGCTTATGGTTACATTAGAAGGCGAAGATGGTGACATGGTCGAGGCCTTAAGTGTTTGCCACATGGACACGTCTCATTGGAGCCGTAACCATGTCTCGTTCGGTGTGCTTGGAGTCGAGCCAGGAATGACATCGGTTTGCCACTTCTTTCCTAGTGATCATTTTGTGTTTATACCTTTTTCGGCAACGATGTAA 894 43.18 MAFRFASLVLFLHLLHTLMLVEGDGSNVIRLNTMDDHGHDVRQNDHMTQTGHVHGHGHGHHSSSSTNPKDPQLMVFYMLKDLEVGKVMPIHFPNRHLSPSQLLSKQEADNIPFSLTELPNLLRMFSFRQGSPQAIAMESTLQECEVKPITGETKFCATSMESVHEFARDIFGFDTQFITMTTTHLKNPPSGLLQNYKVIEISQNIPSPKLVACHTMPYPYAVFYCHSQESENKVLMVTLEGEDGDMVEALSVCHMDTSHWSRNHVSFGVLGVEPGMTSVCHFFPSDHFVFIPFSATM 297
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00236 297 ProSiteProfiles BURP domain profile. 76 293 IPR004873 -
Chmo13g00236 297 MobiDBLite consensus disorder prediction 42 68 - -
Chmo13g00236 297 SMART BURP-2 74 293 IPR004873 -
Chmo13g00236 297 Pfam BURP domain 75 291 IPR004873 -
Chmo13g00236 297 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 39 292 IPR044816 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00236 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:10692600 Chmo13g00244 Chmo-Chr13:11184331 dispersed
Chmo Chmo-Chr13:10149733 Chmo13g00236 Chmo-Chr13:10692600 proximal
Chmo Chmo-Chr13:10692600 Chmo13g00240 Chmo-Chr13:11097542 proximal