AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00281 ATGGAGCTCAGGTGTATACAGTCACCAGTTGTTAGTAGCATACCTACTAACAACAGCAAGCATCAACTAGTACAATGCTACGGTCAGTCTATTCGATCTTTTGGAACGAAAAAAGGTGTTCTTGAAACGAATGGGGCGAAGGTTAAATATGCTCGGTTTAGTGTTCGAGCATCAGCAGCAGTTGGTTCAGTGCCTGCTGAAACAAGAACACAAGATGGCGAAAAAGACGGAGATCCAGTATTTGTTGCAGGAGCAACTGGAAAAGTTGGTTCCCGAACAGTAAGGGAGCTTTTGAAATTAGGATTTAATGTCCGAGCTGGTGTAAGGAGTACTCAAAGAGCAGAATCTCTGGTGAAAAGTGTGCAGCAGATGAAGCTTGATGATGGAAGTCAGCCTATAGAGAAGCTTCAGCTAGTGGAGTGTGACTTGGAGAAACCGGAGCAGATTAAGGCGGCATTGAGCAGTGCTTCAACAGTTGTATGCTGCATTGGAGCGAGTGAGAAGGAGATATTTGATGTCACTGGACCATACCGAATTGACTTTCTAGCCACAAAAAACCTCATTGACGCAGCTGCTGCTGCAAAAGCGAAACACTTTATTCTGGTTACTTCTTTGGGAACAAACAAGTTTGGATTTCCTGCTGCTGTATTGAATTTGTTCTGGGGAGTCCTATGCTGGAAAAGGAAGGCTGAAGAAGCACTTCTGGCTAGTGGAATTCCTTATACTATAGTGAGACCTGGAGGTATGGAGCGTCCTACAGATTCTTTCAAGGAAACACATAATCTTACTCTCGCTACAGAAGATACTTTATTTGGTGGTCTTGTATCAAATCTACAGGTGGCAGAACTCCTTGCATTTATGGCTAAAAACCCAACTCTCTCATATTGTAAAGTACTGGAAGTAGTTGCCGAAACAACAGCACCATTGACCCCCTTTGGGGACCTTTTAACAAAAATACCATCTAAACGTGCTGTACCTTTACAGCCCAAGGAACCTGAAGCTACCAAAGAATCTGAACCTGAACCTGCACCTGCACCTGTTCCTGAAACTGAAATCATTGCCACTGAAACGCCATCCGTGTCTAAGCCAGTTGCCACACGACCACTGTCCCCGTACACAGCTTATGAAAACTTGAAGCCACCAACCTCTCCAATCCCAACACCAAGTGGATACCAAAAGAAACCAGAAGTTGCACCAGAAGCTGTACCAAAAGTTGCAACATCAGAAGTTGCACCAGAAGTTGCACCAGAAGCTGTACCAGAAGCTACGACAGCCGTTGACACTGTTACAAAGATTGAAGACGTAAGTGATATCAAAGAGGATCCTCCTCAAGTGGTGACATCCAACAGCAGGTCCCCTTACTATGTATATGAGACTCTGAAGCCTCCTTCGTCGCCAAATCCAAGTCCTCCATCGGTATCACCACCACCAATCGTCCCTGTCGACAATGGGTCCCCCATTGCTTCCACACCAGAAAGCACCTCAGCTCAATCCACCGTGAAGCCAAGACCACTTTCACCTTACTCCATGTACGAAAGTTTGAAGCCTCCAAGTTCTCCTACTCCTTCCAAACCACATTAA 1581 45.35 MELRCIQSPVVSSIPTNNSKHQLVQCYGQSIRSFGTKKGVLETNGAKVKYARFSVRASAAVGSVPAETRTQDGEKDGDPVFVAGATGKVGSRTVRELLKLGFNVRAGVRSTQRAESLVKSVQQMKLDDGSQPIEKLQLVECDLEKPEQIKAALSSASTVVCCIGASEKEIFDVTGPYRIDFLATKNLIDAAAAAKAKHFILVTSLGTNKFGFPAAVLNLFWGVLCWKRKAEEALLASGIPYTIVRPGGMERPTDSFKETHNLTLATEDTLFGGLVSNLQVAELLAFMAKNPTLSYCKVLEVVAETTAPLTPFGDLLTKIPSKRAVPLQPKEPEATKESEPEPAPAPVPETEIIATETPSVSKPVATRPLSPYTAYENLKPPTSPIPTPSGYQKKPEVAPEAVPKVATSEVAPEVAPEAVPEATTAVDTVTKIEDVSDIKEDPPQVVTSNSRSPYYVYETLKPPSSPNPSPPSVSPPPIVPVDNGSPIASTPESTSAQSTVKPRPLSPYSMYESLKPPSSPTPSKPH 526
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00281 526 FunFam Protein TIC 62, chloroplastic 76 322 - -
Chmo13g00281 526 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 318 IPR036291 -
Chmo13g00281 526 MobiDBLite consensus disorder prediction 463 482 - -
Chmo13g00281 526 CDD SDR-a5 79 305 - -
Chmo13g00281 526 MobiDBLite consensus disorder prediction 323 526 - -
Chmo13g00281 526 Pfam NAD(P)H-binding 84 291 IPR016040 -
Chmo13g00281 526 Gene3D - 78 322 - -
Chmo13g00281 526 MobiDBLite consensus disorder prediction 486 504 - -
Chmo13g00281 526 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 474 IPR044719 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00281 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:12367169 Chmo24g03127 Chmo-Chr24:218772395 dispersed
Chmo Chmo-Chr13:12367169 Chmo23g03222 Chmo-Chr23:222335610 transposed