AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00323 ATGATAAAATCAGTAGCGTTAGTTAAGCCGTTAACGACGATCAGCTGCTCGTCACGTAACGAGACGTATATACCGAAGCTCCAACCGTTTAGCCGAACTAAGATTGATCGGATGGTGAAAGATCCACCTTTGATTCAAAAAGCTGAAAATGATTTAGCAGATTATTGTTCGACATTGGAAGGTGATAGGTCGTATAGCTGTTGGAGAGCTTATTTTGAGCTTAAGGATCTTGAGAAAGAAGCGCCAAAGGAGGAGGTTGAGAGGATGATAATAGAATCAGGAGGTGTGAAATCATTAATGGGATGTTTACACGGAATAACCGAAATTCACAAATCGAAAAAGCAGTCAGAAAATGAGAACGGATCAGAAGCAAGTAATTTGAACTCGTCGGAGAATGTGACAGCAGATGGAGTTAAAAGGACAGAGTGTCCGGTGCCAGATGGATTACCGAAGAGCCGAGAAGAGATGGAGGAAGAAGAGAGTGGGAAAATGCCGGATTCGCCCTTTACTAGATTGCTTCGCTCAAAAGGGAAGTCTCCTGCTTGGTACTCCCCTGCTCCTGATCATTAA 570 43.33 MIKSVALVKPLTTISCSSRNETYIPKLQPFSRTKIDRMVKDPPLIQKAENDLADYCSTLEGDRSYSCWRAYFELKDLEKEAPKEEVERMIIESGGVKSLMGCLHGITEIHKSKKQSENENGSEASNLNSSENVTADGVKRTECPVPDGLPKSREEMEEEESGKMPDSPFTRLLRSKGKSPAWYSPAPDH 189
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00323 189 MobiDBLite consensus disorder prediction 146 165 - -
Chmo13g00323 189 MobiDBLite consensus disorder prediction 119 136 - -
Chmo13g00323 189 MobiDBLite consensus disorder prediction 110 189 - -
Chmo13g00323 189 PANTHER CCG-BINDING PROTEIN 1 11 189 IPR037502 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0010183(InterPro)|GO:0036033(InterPro)|GO:0036033(PANTHER)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00323 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
46085 Chmo13g00323 Chmo1g02364
46086 Chmo13g00323 Chmo2g02128
46087 Chmo13g00323 Chmo3g02243
226111 Chmo14g00331 Chmo13g00323
228759 Chmo13g00323 Chmo14g00331
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr1:120143474 Chmo13g00323 Chmo-Chr13:14115315 wgd
Chmo Chmo-Chr13:14115315 Chmo14g00331 Chmo-Chr14:13914074 wgd
Chmo Chmo-Chr13:14115315 Chmo2g02128 Chmo-Chr2:104585236 wgd
Chmo Chmo-Chr13:14115315 Chmo3g02243 Chmo-Chr3:107665843 wgd