AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00333 ATGGCACCTGTAAAACCCACAAAACACACAATCTCCCAACAAGCCTTCGACGAAATGGTCTCCGAAAACATAACCGATCTGGGCATGGACCCAACCGAAGCCTTAGCAGACGCCATCGAAACCCTGACTTTACAAAACGTAGATCTCTCCGGCATCATCACTTCCACACTTCCAGGCCAGCCCAACCCAGTTCTCCAATCACTTGACAGACTCAAGGATGAGGTTTTGAAGAAAACCCATGATGTTGATGAGTTGGTTTTGAGTGAAATGGTGGATGAGTTGGTGGGTTTGTGTGATGGGGAGGGGGAGGGGAATGTGGTGGTTTGTGGGAGGAATGGGGTGGTTGAGTTGATGTGTGAGGTTTGTGGGGGGATGGGGGTGGGGGTGAGGGTGCGGGTTTCGGCGTTGGATGCTTTGGCTTTGTTTGTTTGTGATATCCAAAGTACGGAAATATTTCGGCAGAGAGGAGGGCCGAAAATGGTAGTTGGTATTTTGAATGATGGAATTGAGAATGTGAATGTATTGAATAGTGGTTTTGCGGTTGTTGCTGCGGCTGCAACTGGTAATGAAGTTATTAAGGAATCTTTTGTCGAGTTACATATACATGAGTTAATGGTTAACGTGATGAGGAAGCATGGTAAAGGGAGCATCCCAAGTCTATATGATGCTATTCGAGTGCTTTTGGCAGCTGATGATAACCGAGTAGTGGCTTCACAAGTTTTTGGCTATGCTCGACAATTTGCGAAAATTGGAATTGCGGAAGCTCTTGTGGAGTCACTTAAAGATGGCCTTAGCTCGCCAAGTTTGGTATCTGCAACTATTGCACTAAAGGCCATTTCAGTGAATGATGACATATGCAGATCAGTTGCTGAAAATGGTGGTATAGATTCATTGCTTGTTTGTATTGATGACGCTGGTGTACAGGGGAACAGCATTGTGGCTAAAGCTTGCTGCTCCCTGTTATCGAAGTTGGCAGGAAGTGACTTTAATAAGAGCGCTATTGTTGAAAGGGGAGGGTTGAATAGGCTCATAACACTTTGTAGCAGACTTGCTGACGATCCTTCTGTCATCCAAGAGGTGATGACTATCATATGTACACTCTGCCTGCGATCACCAGGAAATGCAACCTTAGCCATAGAAGCAGGAGCAGGAGATCTTGCAATCCAATCGATGCAGAAGTTCCCTGAGGCATATCAGCTGCAGAAAAACTCTTGTCTCATGATCCGTAATCTTGTTGCCAGGAATCCAGAGAACAGGACTCTTTTGTTAGGTAATGGTATTGAGAAGATCATACGTAAGGCCAAAGAAAACCACAAAAGCTGCAAAGACGCAGCTACCGCTGCTCTTAGGGACTTGGGGCTTGATAACTACAACTCGTAG 1380 45.72 MAPVKPTKHTISQQAFDEMVSENITDLGMDPTEALADAIETLTLQNVDLSGIITSTLPGQPNPVLQSLDRLKDEVLKKTHDVDELVLSEMVDELVGLCDGEGEGNVVVCGRNGVVELMCEVCGGMGVGVRVRVSALDALALFVCDIQSTEIFRQRGGPKMVVGILNDGIENVNVLNSGFAVVAAAATGNEVIKESFVELHIHELMVNVMRKHGKGSIPSLYDAIRVLLAADDNRVVASQVFGYARQFAKIGIAEALVESLKDGLSSPSLVSATIALKAISVNDDICRSVAENGGIDSLLVCIDDAGVQGNSIVAKACCSLLSKLAGSDFNKSAIVERGGLNRLITLCSRLADDPSVIQEVMTIICTLCLRSPGNATLAIEAGAGDLAIQSMQKFPEAYQLQKNSCLMIRNLVARNPENRTLLLGNGIEKIIRKAKENHKSCKDAATAALRDLGLDNYNS 459
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00333 459 SUPERFAMILY ARM repeat 80 452 IPR016024 -
Chmo13g00333 459 PANTHER UNCHARACTERIZED 6 55 - -
Chmo13g00333 459 Gene3D - 70 459 IPR011989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00333 K24166 armadillo repeat-containing protein 6
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Event-related genes

Select Gene_1 Gene_2 Event_name
226115 Chmo14g00323 Chmo13g00333
228755 Chmo13g00333 Chmo14g00323
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:14470633 Chmo14g00323 Chmo-Chr14:13690934 wgd