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AGRP

Asteraceae Genomic Research Platform

AGRP Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00436 ATGGCCAAAAATTCGGTTGCATACCTTGCCTTCCTTCTGCTTCTCATTGTTGCTATCTCAGAAATCGCGACAGTGAAGGGAGAATTATGCGAGAAAGCGAGCAAGACATGGACTGGAAATTGTGGAAATACAAGACACTGTGACGATCAATGCAAGTCGTGGGAGGGTGCAGCCCATGGAGCTTGCCACGTACGTGGGGGGAAACACATGTGTTTTTGCTACTTCAATTGTCCCAAAGCCGCGAAACTGGCTCAAGATAAACTGAAAGCCGAAGAGCTCGCTAAGGATAAGATTGAAGCCAAGAATTAA 309 46.6 MAKNSVAYLAFLLLLIVAISEIATVKGELCEKASKTWTGNCGNTRHCDDQCKSWEGAAHGACHVRGGKHMCFCYFNCPKAAKLAQDKLKAEELAKDKIEAKN 102
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00436 102 Coils Coil 81 101 - -
Chmo13g00436 102 Gene3D - 29 77 IPR036574 -
Chmo13g00436 102 SUPERFAMILY Scorpion toxin-like 28 77 IPR036574 -
Chmo13g00436 102 Pfam Gamma-thionin family 29 77 - -
Chmo13g00436 102 SMART gth-4 29 77 IPR003614 GO:0006952(InterPro)
Chmo13g00436 102 PANTHER DEFENSIN-LIKE PROTEIN 1 1 77 - GO:0006952(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00436 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
225838 Chmo13g00436 Chmo14g00399
226139 Chmo15g00282 Chmo13g00436
238879 Chmo13g00436 Chmo15g00282
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:19720082 Chmo15g00283 Chmo-Chr15:15026485 dispersed
Chmo Chmo-Chr13:19346397 Chmo13g00436 Chmo-Chr13:19720082 proximal
Chmo Chmo-Chr13:19720082 Chmo14g00399 Chmo-Chr14:16485080 wgd
Chmo Chmo-Chr13:19720082 Chmo22g04603 Chmo-Chr22:284956248 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chmo24g04531 . 28 78 Plant Defensins gene family AT1G19610 62.745 3.00e-21 81.6
Chmo26g00080 . 24 61 Plant Defensins gene family AT5G63660 63.158 7.59e-12 55.1
Chmo9g00514 . 24 77 Plant Defensins gene family AT2G02100 75.926 5.43e-27 94.0
Chmo14g00402 . 3 78 Plant Defensins gene family AT1G19610 53.947 9.34e-26 90.5
Chmo14g00399 CSH 3 78 Plant Defensins gene family AT1G19610 52.632 2.20e-24 87.0
Chmo14g00401 . 1 78 Plant Defensins gene family AT1G19610 52.564 2.05e-26 92.0
Chmo14g00400 . 3 78 Plant Defensins gene family AT1G19610 53.947 9.34e-26 90.5
Chmo23g02719 . 13 78 Plant Defensins gene family AT1G19610 53.03 4.95e-23 83.2
Chmoscaffold_899__frag0ment_2g00001 . 23 76 Plant Defensins gene family AT1G61070 38.889 1.98e-09 47.8
Chmo4g00597 CSH 23 76 Plant Defensins gene family AT1G61070 40.741 1.74e-10 50.4
Chmo4g00596 CSH 7 76 Plant Defensins gene family AT1G61070 39.437 3.85e-13 56.6
Chmo22g04603 . 17 78 Plant Defensins gene family AT1G19610 58.065 1.75e-23 82.4
Chmo13g00431 CSH 13 78 Plant Defensins gene family AT1G19610 56.061 6.41e-24 85.9
Chmo13g00436 CSH 3 78 Plant Defensins gene family AT1G19610 53.947 5.33e-26 90.5
Chmo15g00283 . 1 78 Plant Defensins gene family AT1G19610 52.564 1.28e-27 101.0
Chmo15g00282 CSH 1 78 Plant Defensins gene family AT1G19610 52.564 8.56e-27 93.2
Chmo15g00276 CSH 13 78 Plant Defensins gene family AT1G19610 50.0 3.86e-19 75.1
Chmo2g00290 CSH 21 78 Plant Defensins gene family AT1G19610 62.069 1.20e-22 84.7
Chmo27g03508 . 3 77 Plant Defensins gene family AT2G02130 51.852 5.15e-23 82.8
Chmo14g00391 . 21 77 Plant Defensins gene family AT1G19610 52.632 1.46e-16 69.3
Chmo14g00390 CSH 13 78 Plant Defensins gene family AT1G19610 56.061 5.81e-24 85.9
Chmo14g00392 . 1 78 Plant Defensins gene family AT1G19610 42.308 7.71e-19 73.9
Chmo14g00393 CSH 3 78 Plant Defensins gene family AT1G19610 27.273 9.83e-08 43.9
Chmo14g00394 . 3 78 Plant Defensins gene family AT1G19610 27.273 9.83e-08 43.9
Chmo3g00468 CSH 21 78 Plant Defensins gene family AT1G19610 62.069 6.66e-23 87.0
Chmoscaffold_2534g00003 . 2 78 Plant Defensins gene family AT1G19610 40.506 2.33e-13 57.8
Chmo27g00078 . 3 73 Plant Defensins gene family AT5G63660 62.5 1.58e-26 90.5
Chmo17g03014 . 1 77 Plant Defensins gene family AT2G02120 56.41 5.61e-30 99.4
Chmo17g02969 CSH 1 52 Plant Defensins gene family AT2G02120 49.057 5.45e-13 57.4
Chmo17g02986 . 1 77 Plant Defensins gene family AT2G02120 61.538 1.09e-31 103.0
Chmo6g00563 . 12 76 Plant Defensins gene family AT1G61070 37.879 1.32e-11 52.8
Chmo6g00564 CSH 7 76 Plant Defensins gene family AT1G61070 39.437 1.62e-13 57.8
Chmo12g01499 ACH 20 78 Plant Defensins gene family AT1G19610 57.627 2.51e-18 71.2
Chmo23g04518 . 17 78 Plant Defensins gene family AT1G19610 58.065 1.70e-22 79.7
Chmo23g04516 . 29 78 Plant Defensins gene family AT1G19610 64.0 4.55e-21 76.3
Chmo23g04519 . 29 78 Plant Defensins gene family AT1G19610 64.0 3.91e-21 80.9
Chmo18g02587 . 24 77 Plant Defensins gene family AT2G02120 66.667 1.82e-25 99.8
Chmo18g02554 CSH 1 77 Plant Defensins gene family AT2G02120 57.692 1.96e-30 100.0