AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00548 ATGCTCTTAGAGGGTGATGCCCTAGTTGGAGATCCTCAGTTGAGTAATCAGGCTTATGACAAGTTTATTGCCCAGGTGGTGCACCGACCTGTTGCTCGTCTGGCCGCACCTGGCCTACAATCTTTCAACCCTAACCACACCCCATCCTCAATCTCCACCGTTGATGATCCATCTTCTTCGCACGTGCGATGCACGTGTTGTGATGGGGAGCTTCTTATAGGGTCAAATTCACTTATTTGTATTTACTGCGGTGAATTAAATGACAATAATAATGTTGTTAAAGATGATTTACTGTTTAAGAATACTAATGCTTATGGCTGGCTACTTCAAGCTTTGAATTTTAATGGATCGGAAAGAGTTGGGTCGTTGGCTGAAGGAACTGGAATAAATGGAGGGCAGAGTCCTGCAGAAGATGAATTAAGTTTGTCCGAGCTTCTAGATTTGAAAATTGTATGGCGGGACGTGCCTAAAAGATCTGAAAGATATTCCCATGTCAAGACCTCTGTACTTAACAGTTCTTCGAGTCTTAGTAAAGCCGAGTTTGATGATTTCTTTGTAGAGTCAAAAAGAGCTACCGTGTCAGATGTACCCGAAGTACAACCAGTTGCTAACAAAACCGATCAAGATACAGCCTCTGAGGGTCAAGACAATCTTACTCTATTTCAGAATGTTTTGCCTCCTGAGACATCTGTTACCTCCTCCATTGATGCGGGTGATAATGCTTCATCTGGTTGGGATGCAGACTTTCAGTCTGCAGATAATACGAAAGTGGAGAACGATACTTCCGGATCATTTGACCCTTTTGTAGTTGCTAAAACTGATCTATCCACCCACATGGATTCGGTTTTTGGACAGATGGAAGGGATAAAAGACAGAAAACCGAAGGATGATTCAGACCTATTTCCTTCTGCAGATAAAGTTTGGATTGAAGATGACCTTTTTGGGCAGATGGAAGGTCTTGATAACAAAAAAACGAACATTGATTCAGATCCTTTCCCTTCTACTGGCGGAGATTGGGCTCAAGATGACCTTTTAGCCAACACGACCTCTGCAACTTTTCAGCAAGCTGAGCCGTTGGATTCAGTTGCTCAAGCAAATGACGGGTTTCCAGTTGTTCAAGCAACTTTTCAAAATGAAGGTCTTGATAACAAAAAAACGAACGTTGATTCAGATCCTTTCCCTTCTACTGGCGAAGATTGGGCTCAAGATGACCTTTTTGCCAACACGATCTCTGCAACTTTTCAGCAAGCTAAGCCGATGGATCCAGTTGTTCAAGCAAATGACGGGTTTTCAGGTCATCCAAATGATCATGATTCAGAAGGTGTGGATGAAGAAGACTGGTTTAAGGATGGTAATTGGCAGAAAAGTAGTGCCAATAATTCTTTGTCTCAGCAGACTGATCAGTTAGACGTGTTTGACAAACATAATGATGGATCTTTACAGGATAATATGAATGATTCATCTGCACAAGGTGTCGATGTGGATTGGTTTGAAAATACAAACTGGCAGAAAAGTGCTACAAACAACACGACTATCAATAAAGATTATAATTTATTTGATACGAAACCACAGAATGATGCAGTTTCTTCCTCCTCGTTGTTCAACGACTTGATTCAGAACGACAGTTCAGATCCTGATAATTCAAAGAAACAACAATCAGACACCACTGACTGGTTCCAAGATAGTCAGTGGGCGATTGGTGCTTCTAGCTCTACTACTAATGTGGCGGCCAACAAAGATGATGATGCGTTTGATGATTGGAACGATTTTACAAGCTCAACTGGTAATGAGAGAGTTGCTGCTGGTGACAAGATGTCAGAATTAAATCTCTTTTCATCTACAGCTGATACACATGCACGAGAAGTGGATTTTGGCAACTTTTCACAGTCGGATCTATTTTCTGGTTCATTTAGTAATAAAAATCCAACTGATACTCAAGCAGGATTTGATATCTTTTCACAAGTTTCTACAGCAAGCAGGAATGCTAATGTCGAAGCTGAAAATAGTGCCGAGGGACCAAAGAACGACGAGTTTTCCCTCAATGCATCTACAAGTCCGAATAATGATGTGCAGATGCTGTTGTCACAGATGCATGACTTGTCTTTTATGCTCAAGAGCGAGCTTTCAATCCCTTCGAAGCCAGATGATAGCGGTTCTTCTCACAGTTAA 2169 41.59 MLLEGDALVGDPQLSNQAYDKFIAQVVHRPVARLAAPGLQSFNPNHTPSSISTVDDPSSSHVRCTCCDGELLIGSNSLICIYCGELNDNNNVVKDDLLFKNTNAYGWLLQALNFNGSERVGSLAEGTGINGGQSPAEDELSLSELLDLKIVWRDVPKRSERYSHVKTSVLNSSSSLSKAEFDDFFVESKRATVSDVPEVQPVANKTDQDTASEGQDNLTLFQNVLPPETSVTSSIDAGDNASSGWDADFQSADNTKVENDTSGSFDPFVVAKTDLSTHMDSVFGQMEGIKDRKPKDDSDLFPSADKVWIEDDLFGQMEGLDNKKTNIDSDPFPSTGGDWAQDDLLANTTSATFQQAEPLDSVAQANDGFPVVQATFQNEGLDNKKTNVDSDPFPSTGEDWAQDDLFANTISATFQQAKPMDPVVQANDGFSGHPNDHDSEGVDEEDWFKDGNWQKSSANNSLSQQTDQLDVFDKHNDGSLQDNMNDSSAQGVDVDWFENTNWQKSATNNTTINKDYNLFDTKPQNDAVSSSSLFNDLIQNDSSDPDNSKKQQSDTTDWFQDSQWAIGASSSTTNVAANKDDDAFDDWNDFTSSTGNERVAAGDKMSELNLFSSTADTHAREVDFGNFSQSDLFSGSFSNKNPTDTQAGFDIFSQVSTASRNANVEAENSAEGPKNDEFSLNASTSPNNDVQMLLSQMHDLSFMLKSELSIPSKPDDSGSSHS 722
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00548 722 MobiDBLite consensus disorder prediction 660 687 - -
Chmo13g00548 722 PANTHER DENTIN SIALOPHOSPHOPROTEIN-RELATED 600 717 - -
Chmo13g00548 722 MobiDBLite consensus disorder prediction 536 557 - -
Chmo13g00548 722 MobiDBLite consensus disorder prediction 425 445 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00548 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
225866 Chmo13g00548 Chmo14g00527
226160 Chmo15g00389 Chmo13g00548
238900 Chmo13g00548 Chmo15g00389
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr9:251465445 Chmo13g00548 Chmo-Chr13:24909642 transposed
Chmo Chmo-Chr13:24909642 Chmo14g00527 Chmo-Chr14:21980448 wgd
Chmo Chmo-Chr13:24909642 Chmo15g00389 Chmo-Chr15:20230111 wgd