AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00552 ATGACGGGAAAGAAGCGATTTGCTTCGAAATCAGTGATATTGTTACTGGTATTAATATGTATCGTTGTATTAGTGGGGTTATTATCTCAATTTAAGCTTCAATCTTCTACTGAATTTAGTTATATCGATGACTTAGTCGAGTATCCGTTGATAAAGAATAATGATAAGATTGCTTTTTTATTTCTTGTTAGAGATAACCTTCCTCTTGATTTCCTTTGGCATATTTTCTTCGAGAATGCAGATCCTGAGAATTTCACAATTTACATACACTCGAAGCCTGGTATTCTGTTCGACAAGTCAGTTACCAAATCAGCTTTCTTCTACAATCGGCAGCTGAGAAACAGTGTTGAGGTTGGTTGGGGTACGCCAACTATGATTGAAGCAGAAAAGCTGTTGTTCAAGGCGGCCCTTGATGATCCACAAAATCAGATATTCGTTCTCCTCTCTGACAGCTGTGTCCCACTGTATAATTTTAGTTATATATACAAATATCTCACGTCATCTCCAAGAAGTTTTGTGGACAGCTTTATAGATGCGACGGATGATCCCAGGGAAAAACGCTATAACCCAGAGATGTCCCCTGACATACCCGAAGACAAATGGCGGAAAGGATCCCAGTGGATCACATTGGTCAGAAGGCATGCAGAGGTGGTTGCATATGATCACGCTGTTTTCCCAATCTTTGAAAAACACTGCAAGCGGCGACCTCTTCTAGACTTGAGCAAGGGAAACGAGTCTCTTATAGAACAACAGCAACACAATTGCATCCCAGATGAACATTATGTGTCAACCTTACTTGCAATGCGTGGATTTGAAGCTGAATTGGAGCGAAGAACATTAACTTATTCTTTATGGAACCAGTCTACTGAACAGATGAATACACAAGCCTGGCATCCTGTAACATTTGGTTTTTCAAGTGCGAGCCAGAAAAATATTCAAGATATTAAGGATATTGATCATGTTTATTTTAAGTCTGAAAACCGGACTGAATGGTGTGGTACTAAATCTGGTAGCGGTCATTGTTATTTATTTGCTAGGAAATTCTCGCGTGGTGCAGCCATGCGACTTTTGACCAATGGGGTAGTTGGTCCCTATGATCCCAGCACATTGTTCTTAGACCCAACATAG 1128 40.25 MTGKKRFASKSVILLLVLICIVVLVGLLSQFKLQSSTEFSYIDDLVEYPLIKNNDKIAFLFLVRDNLPLDFLWHIFFENADPENFTIYIHSKPGILFDKSVTKSAFFYNRQLRNSVEVGWGTPTMIEAEKLLFKAALDDPQNQIFVLLSDSCVPLYNFSYIYKYLTSSPRSFVDSFIDATDDPREKRYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDHAVFPIFEKHCKRRPLLDLSKGNESLIEQQQHNCIPDEHYVSTLLAMRGFEAELERRTLTYSLWNQSTEQMNTQAWHPVTFGFSSASQKNIQDIKDIDHVYFKSENRTEWCGTKSGSGHCYLFARKFSRGAAMRLLTNGVVGPYDPSTLFLDPT 375
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00552 375 Pfam Core-2-I-Branching enzyme 57 315 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Chmo13g00552 375 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 24 357 IPR044174 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00552 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:24991121 Chmo15g04925 Chmo-Chr15:299732854 dispersed
Chmo Chmo-Chr13:24991121 Chmo13g05112 Chmo-Chr13:326498065 wgd
Chmo Chmo-Chr13:24991121 Chmo14g00536 Chmo-Chr14:22259626 wgd
Chmo Chmo-Chr13:24991121 Chmo14g05141 Chmo-Chr14:308293021 wgd
Chmo Chmo-Chr13:24991121 Chmo15g00395 Chmo-Chr15:20515340 wgd