Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Chmo13g00564	ATGGGCAATGTTTTAACAGCTGTTAAAACCAAAGGTATGGTATTGAAATCATCACAAGATGACAAAGCATTAGCAAGTCTTAAGGAGATGGAGAACATTATAGGATACAAATTCAAGAAAAAGTTTTTATTACAACAAGCTTTTACGCATTCAAGCTATCAAGGTGCTGAATCCTATGAAAGACTGGAATATGTTGGTGATTCTATTCTCAATTTTCTAATCAGTAAACAGCAATTCTATAAGTACCCGAATCTCCCACCAGGGTCATTGACTGCTCTTCGAGCTGCCAACGTTGATACTGAGAAGCTAGCACGCGTAGCAGTTAAATATAACTTTCATAAGTACCTTCGACATGAAAACCCGACGCTTAGTAAACAAATTCGGGTGTTTACGAGAGCTCTTGAAAACTACCCATTTCATTCATATGGATTAATAGATGCTCCAAAGACATTAGCTGATATTGTTGAATCCACAATAGGGGCCATCTATGTTGACAGCAACTCTTCGATTGATACCACATGGGAGGTGGCTAAGATTCTACTCGAGCCCATGATCACTCCTGAAATGCTGCAACAGAATCCGGTCAGGAAGCTCAATGAACTCTGCCACAAAAAGAAACTGAAGATACGATTCAGAGATAAATGGTCAAAACAAGGGGTTTATGAAGTTTTAACTGGTGATCAACTTATAGGAAGAGGTGAATACAAAGCCAAGAAGGAAATTGCAGTGAACAGAGCGGCTGAGGATGCATGCAACAACATTTTGAATACCATGGATGATAAAAACATCATAACTGAAACTGAAGAATAG	810	38.64	MGNVLTAVKTKGMVLKSSQDDKALASLKEMENIIGYKFKKKFLLQQAFTHSSYQGAESYERLEYVGDSILNFLISKQQFYKYPNLPPGSLTALRAANVDTEKLARVAVKYNFHKYLRHENPTLSKQIRVFTRALENYPFHSYGLIDAPKTLADIVESTIGAIYVDSNSSIDTTWEVAKILLEPMITPEMLQQNPVRKLNELCHKKKLKIRFRDKWSKQGVYEVLTGDQLIGRGEYKAKKEIAVNRAAEDACNNILNTMDDKNIITETEE	269

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Chmo13g00564	269	SMART	riboneu5	42	190	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chmo13g00564	269	Pfam	Double-stranded RNA binding motif	194	253	IPR014720	-
	Chmo13g00564	269	ProSitePatterns	Ribonuclease III family signature.	60	68	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chmo13g00564	269	Gene3D	Ribonuclease III domain	21	196	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chmo13g00564	269	FunFam	Endoribonuclease dicer-like 1	21	188	-	-
	Chmo13g00564	269	ProSiteProfiles	Ribonuclease III family domain profile.	27	167	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chmo13g00564	269	Gene3D	-	197	260	-	-
	Chmo13g00564	269	SUPERFAMILY	RNase III domain-like	26	187	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chmo13g00564	269	SUPERFAMILY	dsRNA-binding domain-like	149	254	-	-
	Chmo13g00564	269	CDD	RIBOc	43	190	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Chmo13g00564	269	PANTHER	DICER-RELATED	18	257	-	GO:0003723(PANTHER)\|GO:0004525(PANTHER)\|GO:0005634(PANTHER)\|GO:0005737(PANTHER)\|GO:0030422(PANTHER)
	Chmo13g00564	269	Pfam	Ribonuclease III domain	60	166	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Chmo13g00564	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Chmo	Chmo-Chr13:25543799	Chmo15g00404	Chmo-Chr15:20863823	dispersed
	Chmo	Chmo-Chr13:25301891	Chmo13g00564	Chmo-Chr13:25543799	proximal