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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00644 ATGTCGTTGACCGTTGAAGCTGTTTCTGGTTGCTCCAAGGACATGGGGTTCAAGGAAAACAAGGAACAAGGCAAAGAAAGTATTAAAAGAAGTGGGAGTGAATCTTCATTTTGTGAAAGTGAAAATGAAGGAGATGAAGTTGAAGATATTAAAGTTGAATTGGGTCCTCAATGCACCCTTAAAGATCAACTTGAGAAGGATAAGGATGATGAGAGTCTGAGAAAGTGGAAAGAACAACTACTTGGGAATGTTGATATTAATGATGTTGGAGAATCATTAGAACCAGAAGTGAAGATCCTGAGTCTTTCAATACTGTCCCCAGGAAGATCCGACATTGTTCTTGCAATACCCACAGATGGAAAACCTAAAGGCTCATGGTTCACACTGAAAGAAGGCTCTCGTTACAGCCTCAGGTTCTCCTTTCAAGTTAAACATAACATTGTTTCCGGTTTAAAGTACACCAACAATGTATGGAAAACTGGTGTCAAGGTGGATAACGCGAAACAGATGCTTGGTACTTTTAGTCCACAGCAAGAAGCATACACATGTGATATGCCTGAGGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAAACTAAGGTAATTTTAAGAATATTTTTACTTGAGTTCTATATAATTAGTTAG 660 38.79 MSLTVEAVSGCSKDMGFKENKEQGKESIKRSGSESSFCESENEGDEVEDIKVELGPQCTLKDQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILSLSILSPGRSDIVLAIPTDGKPKGSWFTLKEGSRYSLRFSFQVKHNIVSGLKYTNNVWKTGVKVDNAKQMLGTFSPQQEAYTCDMPEETTPSGYFARGSYSAKTKVILRIFLLEFYIIS 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00644 219 Gene3D Coagulation Factor XIII, subunit A, domain 1 50 209 IPR024792 -
Chmo13g00644 219 SUPERFAMILY E set domains 41 206 IPR014756 -
Chmo13g00644 219 MobiDBLite consensus disorder prediction 15 29 - -
Chmo13g00644 219 MobiDBLite consensus disorder prediction 1 54 - -
Chmo13g00644 219 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Chmo13g00644 219 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Chmo13g00644 219 PANTHER RHO GDP-DISSOCIATION INHIBITOR 31 206 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Chmo13g00644 219 FunFam Rho GDP-dissociation inhibitor 1 50 209 - -
Chmo13g00644 219 Pfam RHO protein GDP dissociation inhibitor 41 207 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00644 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
225885 Chmo13g00644 Chmo14g00603
226182 Chmo15g00479 Chmo13g00644
238922 Chmo13g00644 Chmo15g00479
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:29966677 Chmo23g04698 Chmo-Chr23:281831082 dispersed
Chmo Chmo-Chr13:29966677 Chmo14g00603 Chmo-Chr14:27161566 wgd
Chmo Chmo-Chr13:29966677 Chmo15g00479 Chmo-Chr15:25069428 wgd
Chmo Chmo-Chr13:29966677 Chmo22g04706 Chmo-Chr22:288446186 wgd