AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00645 ATGATGGGAGGTTGTTGTTATAACATTCGCCAGAAAACTCGTCGGATAAATCAGGCACTTAAGATGATAAAGTTTGAAGATGAAGACGAAGAGTATAAAGTAGTTGCTACTTGTATGGCTCCTATTTTTACAACACTTTTGCCATTGTCCTTTGACTTTTTAACTTCTGTGGTTGTTGATATTGTTCTTCTAGATTCTACTAATCTAGTCCCAATCACTAAACCTCTCTCCTTAATGAATACAGTATTAAAGTACTATACAGATAAGGTAATCATACTATCAAAGATTGTGTTTCCATTTCCACTTACATTTACACGTGAAGAACAGGTTGATATGTTTGAATGGAAACCGCTCCTCAGTCTTGATCAAGTGATCTTGAGGCGGATACTTGTGACGATGAGGCCAAACACGAGGAAGAGTCCAAAAGTAGCCGATGAAAGCATGTTTGAAGAAGGAAATGGACCTGAGTTTCCAAATATGTCTCAGCATACAAGGCAAGGGTTCTCAAGTGGTCTTTCTATTATATATACTATCATAAGAGCTCCGTTCTCACTTCTATCATGCCTATCGTCCCACAACCATATAAGTGGTGCCGCTGATGGAGTATGGGTCTCTGGAGAGTTTTCACGGATGTCTGACATTAATCATCTTGTGGTTAGCGATAGCATGCGCTATGCTATTTTGATGTAA 690 38.84 MMGGCCYNIRQKTRRINQALKMIKFEDEDEEYKVVATCMAPIFTTLLPLSFDFLTSVVVDIVLLDSTNLVPITKPLSLMNTVLKYYTDKVIILSKIVFPFPLTFTREEQVDMFEWKPLLSLDQVILRRILVTMRPNTRKSPKVADESMFEEGNGPEFPNMSQHTRQGFSSGLSIIYTIIRAPFSLLSCLSSHNHISGAADGVWVSGEFSRMSDINHLVVSDSMRYAILM 229
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00645 229 PANTHER BNAC03G44900D PROTEIN 127 229 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00645 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
46153 Chmo13g00645 Chmo1g02211
46154 Chmo13g00645 Chmo2g01977
46155 Chmo13g00645 Chmo3g02411
226183 Chmo15g00481 Chmo13g00645
238923 Chmo13g00645 Chmo15g00481
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:30075769 Chmo23g04705 Chmo-Chr23:281961906 dispersed
Chmo Chmo-Chr1:109754308 Chmo13g00645 Chmo-Chr13:30075769 wgd
Chmo Chmo-Chr13:30075769 Chmo15g00481 Chmo-Chr15:25288803 wgd
Chmo Chmo-Chr13:30075769 Chmo2g01977 Chmo-Chr2:93199468 wgd
Chmo Chmo-Chr13:30075769 Chmo22g04715 Chmo-Chr22:288536683 wgd
Chmo Chmo-Chr13:30075769 Chmo3g02411 Chmo-Chr3:117188045 wgd