AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00690 ATGTCATCCCAACCTCCAATTGACACCAACAACAACTCAAACACCAAATCCGAACATGAAACAACCACACTCGCCTTCCACAAAAAACGAGCTCGTCGCGTAAGCTTCGCCGAAAACACATCCGTACACATCTTTAACCGCGACGAAGACTCCGGTACTCCCGTAAACGCGAAACAACCACCGTCTGTTGAGAATGAGTATTCTGACGAACCTAAGTTTTGGAATGATAATGATAATGATAATGGAAATGATGAGGGTGTGGAGGAGGATGAGGATGAGGATGTGGATATGGAGGATGATATGGATGAATCCGGTGGCTCGAGAAGTCCGTTTTTGCGATTGGTTGGGTCGTCGCCGTCGTCCGGTGGGAGTACTTTTGGTTCGGCTACCTCAAATGATGAAGATAATTTTTTTGGTCCTGTATCGACAAACTTCATTAGACGAGATATACTGGACCGTGAAGCTTCTGACGGAAATCATGATCAGACTATGGATTCAACAGCCTTTTCGATGCATTTTCGTAGCATTGCTAGGTCAGACTCAGAAGTGGAGTTGAAGACCTCAACAGGGGTTCACCTTTCCTTTGAGAAGAAAACCCCAAATCAAGATTCAAATCCCACACATACAGGAAGCTTAATGCTTATGACACAAGCTAAGAAGCCAAATCATCAACCTTCGGTTTCTACCTCGAAACTACACACTTCATCCGAGTCTAATGATATGAGTATTGTTGGAGAATATCGTTATAAATATGACTATGGAGAACTATCTCCGACATTGGATGCACTCTTGGCTGAAGGCAATAAGGATTTGCGTGTGATCGCTGCTTCTAAAGATACTATCCTGAAATCACCAAGAATGGTTGCAGCAACCGAAGAGTATGGGGCTAACCTCATGGATTTTAGTTGTAGTGAAGATAATAATAATCTAGAAGGGATTATTACTCATGAAATGGTCAATGAAGATGTTGCCCCTAAGCATAATCAGCTTGGTGTGGTCAATGACGGATCAAATATATCTTCCAATAAGGAGATGCCTTTAGATGTCTTATCTGAGGCTGAGAATCATTTGTCCTCTGGTTCTTCTATTTTGGTTACCCCAAATGCTAAGACAACAGATCTTGTCAAAGATGCAGTTCAGAGAAAGTCAAGCTTGGACTTCATTGCTACCAGTCAAAGCAATCCTAATCAACATCAACCTCCTTTTGTAGGGGCAGTGAACTCTTTGACTGATGAGTCTAGTCACATGCATTTCAATGGTGTTAGTCCATCTAAATTACCATCTGCTGTGACTCCTCTTCATAATTATTCAAGTGTTTTTGTAAGAACAGATACCCCGAAGCATAGTCGGAGTGTTTTATCCATACAGAAAAGCATTTCTAAACTCAAAATGCTAAACGCTTCTCCCTTTTCTGCTGATTTGACTGCTAAACTTGAAGATTCAGCTTCCCGATCTGTACACAGCCCCTCTAAGATGACTCCTAATACTTCGTTGGAGAAAAACCATAAAGCTTCTTTACTTAATTATATGGATGATAGTGGACAATTATCATCTGCCATTCAGAAGAAGAGAGAAAGAGCAAGTTCAACAACTATGGATGATGTTAGGTTGCAGACCCCAAAGAATGCTGTCCCTGTAACTCATATGCAAAATGTTGTCAAAATTGCATCACCTTTATTAATACCACCTGAAAACGAATTGTCTGGAGAAAAGTTGCAGACAGAACTCTTGTCATCGGCAGATATCCAAAATGGTTATGAATATGATAAAGACAAATTTAATTTACCTCAAAGTTTTGGCTATTCTCCACAGAAGAAGTTAAAGATTGTGAATACATCAGAATTCAGAAGCAGTCCTCTGATAGATGCAAAGCAATTTGCCAAACACAATGAACCGGGGGAAAACATTACTAATGCAAGTCTTTCTGCTAGTGCTGCTGACAAGACCAATGCCTTGTGCATTGAGACGTTAGAAATAGATAGTTCGGAAATGTCCACTGAAGAAGAAATGGTGGATATCAGAGAGGTTTCTCTCAGTGAGGCGGGTGGTAACTTAGAAACAAAGGAGAATGCTACAACGGTATTGAAGGATGATCAGCATGCGCTGATTCAACCTAAGTTTATGGAAAGTGATATTGCCAGGGGAGAGTCCAGACGAGCTTCCCCGGTTTTGGAAGAAAAGACAGATAAACAATCTTGTCAAAAGAATTTGCATGACGCGGTTTGTCAAAGTCCCTCAAATAAACAGCCATATGATGTGAACGTTGATTTCATACCGGCGGAAAATGTACCGTCGCCAAGTCCTCATCGCTTATCAAATGGAGATATAATCTCTGAGCAGGGAAGAAAGACTATATTTGGGGTGGTTGAGAGAACTGCTAGAACTCAGAGGAGTTCAAATATCCCAAAAAGTCATGTTGGCACCAAAGTCTCAAGTGACAATGAGATATCAATGATTGTACACACTTTTATAAATGCAACTGAGATGACTGCAATGCTCTGTAGAGAAACGAAAGAACTTATACCTCAATCAGCTGATAAGTTCAACTTGCATGCGATTGATTGTCTGACAAGCATCATAGATCAGCTTCTGAAAGCAAAAACATATCAGCTTCTTTCTGACGAAATCAAATCTCAGAAAAGTGTAGATGCCAGTAAATACATTGCACACAAAAGAGCCGCAGAGATGAAACTACTTGTGTGCAAATTAGTGCATGAGAAAGCAAAGTTGCGGCTACTGAATGTGAAGCAGGAGAGGTTGCTGGAAAGGGTAGATTCAGTTTCCTCCGGTATATTGGAGTCCGAGGAATTAAGGTTGATTTTTCCACCACAACAATCTTCACTTGTCCATTGCAAGTCCTTTTCAGTCAACATGAACAACCTTCATGAGAGCCAGATTGACAGTGGCAAAGTGACGTCAATGGAGCAAACAGTTGATCATATCGATAGAAGAATTGCAAACTTGACCAAATCATTTCACAAGTCATGTAAGATGAAGGGAGAACCCAGCGCCCATGACACTATTGCATTTGTTAATGATTTTGTGAAGAAGCGAGCATGCTGCCACATCATACGAAAGGATCTACAGCTTTGGACTGTAGACCATTTTGAGGTGGGAAATGGCTGCCGCAATGTTAATCTCAACTACCTCGACCTGATAACTCAAAGGTTAACAGTCAAAACTGGTCCTGTCCCAAGCATTTCTGTTTCACACGAGTTACATAAAGCGAACATCAGCAAGATCTTCAATGACATGGATGCTTGTGCTGCATTCGAATTTGTCTTTTATGCTGGAATGATGCAGAACCATGCCGATGCTACAAGCTTAGCTCAAGCAACTCAAGTGACTGGTTCTCGTTTGGGCAGTTTGTTAGATGTGTTGGAAGAGATACAACATGCAAGAATAGAGCCAAAAAACTTGATATCTGCAAGATTTCACACACCCAAAGCTGAGCAACTTGACCTTGAACTCTGCTTTTTTGATTCAACAAATCGTAGGCAGGCAACAGTTACATTAGACGCATCATGTTTGGCAAGGGGCATCTATCCTTCAGAAATTGTACCGTATCAGGTTGACATTCCTATTGATGAGCCACAAAGCTCTTCTCCGTCGCTTTCAGCTGAGATTGCATCAGCATTTCAAGATCTTAAAGTGGGATATTTAAGGATTCAACGGTTGTGTACATGCATTTCCAAGTTAATCGGCCCTCCAAGCAGGTACTTGATGCAAGGTTCGAGTTAG 3741 41.25 MSSQPPIDTNNNSNTKSEHETTTLAFHKKRARRVSFAENTSVHIFNRDEDSGTPVNAKQPPSVENEYSDEPKFWNDNDNDNGNDEGVEEDEDEDVDMEDDMDESGGSRSPFLRLVGSSPSSGGSTFGSATSNDEDNFFGPVSTNFIRRDILDREASDGNHDQTMDSTAFSMHFRSIARSDSEVELKTSTGVHLSFEKKTPNQDSNPTHTGSLMLMTQAKKPNHQPSVSTSKLHTSSESNDMSIVGEYRYKYDYGELSPTLDALLAEGNKDLRVIAASKDTILKSPRMVAATEEYGANLMDFSCSEDNNNLEGIITHEMVNEDVAPKHNQLGVVNDGSNISSNKEMPLDVLSEAENHLSSGSSILVTPNAKTTDLVKDAVQRKSSLDFIATSQSNPNQHQPPFVGAVNSLTDESSHMHFNGVSPSKLPSAVTPLHNYSSVFVRTDTPKHSRSVLSIQKSISKLKMLNASPFSADLTAKLEDSASRSVHSPSKMTPNTSLEKNHKASLLNYMDDSGQLSSAIQKKRERASSTTMDDVRLQTPKNAVPVTHMQNVVKIASPLLIPPENELSGEKLQTELLSSADIQNGYEYDKDKFNLPQSFGYSPQKKLKIVNTSEFRSSPLIDAKQFAKHNEPGENITNASLSASAADKTNALCIETLEIDSSEMSTEEEMVDIREVSLSEAGGNLETKENATTVLKDDQHALIQPKFMESDIARGESRRASPVLEEKTDKQSCQKNLHDAVCQSPSNKQPYDVNVDFIPAENVPSPSPHRLSNGDIISEQGRKTIFGVVERTARTQRSSNIPKSHVGTKVSSDNEISMIVHTFINATEMTAMLCRETKELIPQSADKFNLHAIDCLTSIIDQLLKAKTYQLLSDEIKSQKSVDASKYIAHKRAAEMKLLVCKLVHEKAKLRLLNVKQERLLERVDSVSSGILESEELRLIFPPQQSSLVHCKSFSVNMNNLHESQIDSGKVTSMEQTVDHIDRRIANLTKSFHKSCKMKGEPSAHDTIAFVNDFVKKRACCHIIRKDLQLWTVDHFEVGNGCRNVNLNYLDLITQRLTVKTGPVPSISVSHELHKANISKIFNDMDACAAFEFVFYAGMMQNHADATSLAQATQVTGSRLGSLLDVLEEIQHARIEPKNLISARFHTPKAEQLDLELCFFDSTNRRQATVTLDASCLARGIYPSEIVPYQVDIPIDEPQSSSPSLSAEIASAFQDLKVGYLRIQRLCTCISKLIGPPSRYLMQGSS 1246
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00690 1246 MobiDBLite consensus disorder prediction 21 36 - -
Chmo13g00690 1246 MobiDBLite consensus disorder prediction 111 138 - -
Chmo13g00690 1246 MobiDBLite consensus disorder prediction 1 138 - -
Chmo13g00690 1246 MobiDBLite consensus disorder prediction 713 732 - -
Chmo13g00690 1246 Pfam Knl1 RWD C-terminal domain 974 1126 IPR040850 -
Chmo13g00690 1246 MobiDBLite consensus disorder prediction 1 20 - -
Chmo13g00690 1246 MobiDBLite consensus disorder prediction 81 101 - -
Chmo13g00690 1246 PANTHER OS06G0608100 PROTEIN 1 1234 - -
Chmo13g00690 1246 MobiDBLite consensus disorder prediction 217 238 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00690 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
46180 Chmo13g00690 Chmo22g04835
46181 Chmo13g00690 Chmo23g04792
46182 Chmo13g00690 Chmo24g04800
225904 Chmo13g00690 Chmo14g00681
226203 Chmo15g00556 Chmo13g00690
238943 Chmo13g00690 Chmo15g00556
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:32341236 Chmo21g00009 Chmo-Chr21:713702 dispersed
Chmo Chmo-Chr7:234651279 Chmo13g00690 Chmo-Chr13:32341236 transposed
Chmo Chmo-Chr13:32341236 Chmo14g00681 Chmo-Chr14:30494754 wgd
Chmo Chmo-Chr13:32341236 Chmo15g00556 Chmo-Chr15:29072192 wgd
Chmo Chmo-Chr13:32341236 Chmo22g04835 Chmo-Chr22:293114297 wgd
Chmo Chmo-Chr13:32341236 Chmo23g04792 Chmo-Chr23:285648795 wgd
Chmo Chmo-Chr13:32341236 Chmo24g04800 Chmo-Chr24:289132666 wgd