AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo13g00751 | ATGGCAACTTCTTCAAACTACACTCATCCTTTTACAAACAATAACCCAAGAACCAAATTCTTAACATCTTCTAAAGATGGAGTATTTGGTTCATCTCCAGTTTCAGTAACAGTTAAAAAACAGAGCAACCAAACTCGTCAAAATTCGATACGTTCAGCGCTTCAAACGCCCTCAATTCTTCAAGTACCGAAACAAACACCGCGAAAAACCTCGAAAACTATCGAATTACCATCTCTAAGTCCATCTCCAAAGGTCCCACAAAACTGGAACTTGTTGCAAAAGCTTGCTTCGATCGCATTGGACGCGATCGAAGACCGAATAAAAGATAATGAAAAATTACACCCTTTACCGAAAACAGTCGACCCAGATGTTCAGATCGCCGGAAACTTCTCTCCGGTCCCGGAGCAGCCCGTGAGGCATTCTTTACCGGTGGCCGGAAAAATACCGGAGCATTTTAATGGTGTTTATTTACGTAACGGAGCAAATCCATTATTCGAACCAACTTCCGGGCATCATTTGTTTGACGGAGATGGCATGATTTATACTGTAAAGTTCGATAATGGGTCCGCGAGTTACGCGTGCAGACACACGGAAACTCACCGACTCGTACAAGAACGCGCTATCGGAAAGCCCGTTTTCCCCAAAGCTATTGGGGAACTACACGGGCATTCTGGTATCGCGAAATTGTTGTTGTTTTACGCACGTGGACTGTGCGGGTTGGTTGATCACAACAATGGCATTGGCGTAGCTAACGCCGGTTTAGTTTATTTTAACAACCGGCTGTTAGCTATGTCAGAAGATGATTTACCTTATCATGTCAGAGTTACACCTTCTGGCGATTTGAAAACCGCTGGAAGGTATAACTTTAATGGACAGCTGGAGTCCACTATGATAGCTCACCCGAAACTGGACCCAGTTTCGGGTGAACTGTTTGCATTAAGTTATGACGTTATTAAAAAGCCATATTTGAAATATTTTTGGTTTTCACCCGATGGGAAGAAGTCAGATGACGTCGAAATTGATTTGGAGAAACCTACAATGGTTCATGATTTCGCGATAACTGAAAACTACGTTGTGGTCCCAGACCATCAAGTAGTTTTCAAGATGTCGGAAATGGTGACGGGTGGGTCACCCGTTGTATACGACAAAGAAAAAGTATCCCGGTTTGGTGTTTTGGACAAATATGCCAAAAATGGGTCGGGGATCAAATGGGTCGAGGTTCCGGATTGTTTTTGTTTTCATTTGTGGAATGCGTGGGAGGAGCCTGAGTCGGATGAAGTTGTGGTAATCGGGTCGTGTATGACTCCAGCTGACTCGATTTTTAACGAATGTAACGAAGAGTTAAAAAGTGTTTTATCTGAAATTCGACTTAACTTAAAAACCGGAAAATCAACACGCCGAGCAATCATTTCACCCGAAAACGATGTTAACTTAGAAGCTGGAATGGTGAACAAAAATCTTTTAGGCCGAAAAAGTAAATACGCTTATCTAGCGATTGCTGAACCATGGCCAAAAGTGTCGGGTTTTGCTAAAGTTGATCTTTCAACAGGGGAGACTAAGAAGTTTATTTATGGAGACGAAAAGTATGGTGGTGAGCCGTTGTATCTACCTAGAGACAATGCTAGTGACGAAGACGATGGTCATATTTTGGCCTTTGTGCACGACGAAAAAGCATGGAAGTCCGAACTCCAGATTGTGAATGCAAAGACAATGGAATTAGAGGCGACAGTTATGTTACCATCGAGGGTTCCTTATGGTTTTCATGGAACATTTATTCCAACCCGTGATTTAGCATCGCAGGCGTGA | 1806 | 42.91 | MATSSNYTHPFTNNNPRTKFLTSSKDGVFGSSPVSVTVKKQSNQTRQNSIRSALQTPSILQVPKQTPRKTSKTIELPSLSPSPKVPQNWNLLQKLASIALDAIEDRIKDNEKLHPLPKTVDPDVQIAGNFSPVPEQPVRHSLPVAGKIPEHFNGVYLRNGANPLFEPTSGHHLFDGDGMIYTVKFDNGSASYACRHTETHRLVQERAIGKPVFPKAIGELHGHSGIAKLLLFYARGLCGLVDHNNGIGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTAGRYNFNGQLESTMIAHPKLDPVSGELFALSYDVIKKPYLKYFWFSPDGKKSDDVEIDLEKPTMVHDFAITENYVVVPDHQVVFKMSEMVTGGSPVVYDKEKVSRFGVLDKYAKNGSGIKWVEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNECNEELKSVLSEIRLNLKTGKSTRRAIISPENDVNLEAGMVNKNLLGRKSKYAYLAIAEPWPKVSGFAKVDLSTGETKKFIYGDEKYGGEPLYLPRDNASDEDDGHILAFVHDEKAWKSELQIVNAKTMELEATVMLPSRVPYGFHGTFIPTRDLASQA | 601 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo13g00751 | 601 | Pfam | Retinal pigment epithelial membrane protein | 135 | 593 | IPR004294 | GO:0016702(InterPro) | |
| Chmo13g00751 | 601 | MobiDBLite | consensus disorder prediction | 62 | 82 | - | - | |
| Chmo13g00751 | 601 | PANTHER | BETA-CAROTENE DIOXYGENASE | 112 | 593 | IPR004294 | GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo13g00751 | K09840 | 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr13:35756047 | Chmo1g02270 | Chmo-Chr1:113628464 | dispersed | |
| Chmo | Chmo-Chr13:35756047 | Chmo14g00818 | Chmo-Chr14:38641709 | wgd | |
| Chmo | Chmo-Chr13:35756047 | Chmo15g00622 | Chmo-Chr15:32928172 | wgd | |
| Chmo | Chmo-Chr13:35756047 | Chmo2g02032 | Chmo-Chr2:97582080 | wgd | |
| Chmo | Chmo-Chr13:35756047 | Chmo22g04861 | Chmo-Chr22:293810089 | wgd | |
| Chmo | Chmo-Chr13:35756047 | Chmo23g04811 | Chmo-Chr23:286107390 | wgd | |
| Chmo | Chmo-Chr13:35756047 | Chmo24g04821 | Chmo-Chr24:289724220 | wgd | |
| Chmo | Chmo-Chr13:35756047 | Chmo3g02347 | Chmo-Chr3:113517638 | wgd |