Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo13g00772 | ATGGCATCTCATTCCTTAACTACCAGCACAACTTTAAGACTTCAAAATTTGTTTTCATCAAAATCCCAAGTAAATTTTGCACTGAAATCATCTAGTTTAAGAATACCAACCACAAGACTTTGCTCATCTATTCGGTCTATGGGTTCTTCTTCTTCATCACAGAAACCAGAGTCTACTACTCAAGGGGGTGGAAACACCGATTTTAAATCTGTTAGTGATCAAGAATGGAAAAGTAAGCTTACCGGAGAACAGTTTTACGTAACTCGACAAAAGGGGACGGAAAGGGCCTTTACCGGGGAATACTGGAACACCAAAACTCCTGGGACTTACCATTGCATTTGTTGCGACACTCCACTATATGAGTCATCGACCAAGTTTGATAGTGGAACTGGTTGGCCATCGTACTATCAGCCAATAGGAGACAATGTGAAGACAAAGTTAGACCTATCCATCATTTTCATGCCTCGACAAGAAGTTGTATGTGCAGTTTGTGATGCTCATCTTGGTCATGTATTTGACGATGGTCCTCCACCTACTGGGAAACGTCATTGCATCAATAGTGCTTCCCTCAAGTTGAAGCCAAAGTAG | 588 | 41.5 | MASHSLTTSTTLRLQNLFSSKSQVNFALKSSSLRIPTTRLCSSIRSMGSSSSSQKPESTTQGGGNTDFKSVSDQEWKSKLTGEQFYVTRQKGTERAFTGEYWNTKTPGTYHCICCDTPLYESSTKFDSGTGWPSYYQPIGDNVKTKLDLSIIFMPRQEVVCAVCDAHLGHVFDDGPPPTGKRHCINSASLKLKPK | 195 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo13g00772 | 195 | ProSiteProfiles | Methionine-R-sulfoxide reductase (MsrB) domain profile. | 73 | 195 | IPR002579 | GO:0033743(InterPro) | |
| Chmo13g00772 | 195 | PANTHER | METHIONINE SULFOXIDE REDUCTASE | 38 | 194 | IPR028427 | GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER) | |
| Chmo13g00772 | 195 | NCBIfam | peptide-methionine (R)-S-oxide reductase MsrB | 71 | 194 | IPR002579 | GO:0033743(InterPro) | |
| Chmo13g00772 | 195 | MobiDBLite | consensus disorder prediction | 44 | 74 | - | - | |
| Chmo13g00772 | 195 | FunFam | Peptide methionine sulfoxide reductase MsrB | 65 | 195 | - | - | |
| Chmo13g00772 | 195 | Pfam | SelR domain | 75 | 194 | IPR002579 | GO:0033743(InterPro) | |
| Chmo13g00772 | 195 | Gene3D | Peptide methionine sulfoxide reductase. | 63 | 195 | - | - | |
| Chmo13g00772 | 195 | SUPERFAMILY | Mss4-like | 71 | 194 | IPR011057 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo13g00772 | K07305 | peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 226228 | Chmo15g00652 | Chmo13g00772 | |
| 238968 | Chmo13g00772 | Chmo15g00652 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr13:38636740 | Chmo14g00057 | Chmo-Chr14:2854035 | dispersed | |
| Chmo | Chmo-Chr13:38636740 | Chmo14g00798 | Chmo-Chr14:36432400 | wgd | |
| Chmo | Chmo-Chr13:38636740 | Chmo15g00652 | Chmo-Chr15:35652404 | wgd |