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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00772 ATGGCATCTCATTCCTTAACTACCAGCACAACTTTAAGACTTCAAAATTTGTTTTCATCAAAATCCCAAGTAAATTTTGCACTGAAATCATCTAGTTTAAGAATACCAACCACAAGACTTTGCTCATCTATTCGGTCTATGGGTTCTTCTTCTTCATCACAGAAACCAGAGTCTACTACTCAAGGGGGTGGAAACACCGATTTTAAATCTGTTAGTGATCAAGAATGGAAAAGTAAGCTTACCGGAGAACAGTTTTACGTAACTCGACAAAAGGGGACGGAAAGGGCCTTTACCGGGGAATACTGGAACACCAAAACTCCTGGGACTTACCATTGCATTTGTTGCGACACTCCACTATATGAGTCATCGACCAAGTTTGATAGTGGAACTGGTTGGCCATCGTACTATCAGCCAATAGGAGACAATGTGAAGACAAAGTTAGACCTATCCATCATTTTCATGCCTCGACAAGAAGTTGTATGTGCAGTTTGTGATGCTCATCTTGGTCATGTATTTGACGATGGTCCTCCACCTACTGGGAAACGTCATTGCATCAATAGTGCTTCCCTCAAGTTGAAGCCAAAGTAG 588 41.5 MASHSLTTSTTLRLQNLFSSKSQVNFALKSSSLRIPTTRLCSSIRSMGSSSSSQKPESTTQGGGNTDFKSVSDQEWKSKLTGEQFYVTRQKGTERAFTGEYWNTKTPGTYHCICCDTPLYESSTKFDSGTGWPSYYQPIGDNVKTKLDLSIIFMPRQEVVCAVCDAHLGHVFDDGPPPTGKRHCINSASLKLKPK 195
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00772 195 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 73 195 IPR002579 GO:0033743(InterPro)
Chmo13g00772 195 PANTHER METHIONINE SULFOXIDE REDUCTASE 38 194 IPR028427 GO:0005737(PANTHER)|GO:0006979(InterPro)|GO:0016671(InterPro)|GO:0030091(InterPro)|GO:0033743(PANTHER)
Chmo13g00772 195 NCBIfam peptide-methionine (R)-S-oxide reductase MsrB 71 194 IPR002579 GO:0033743(InterPro)
Chmo13g00772 195 MobiDBLite consensus disorder prediction 44 74 - -
Chmo13g00772 195 FunFam Peptide methionine sulfoxide reductase MsrB 65 195 - -
Chmo13g00772 195 Pfam SelR domain 75 194 IPR002579 GO:0033743(InterPro)
Chmo13g00772 195 Gene3D Peptide methionine sulfoxide reductase. 63 195 - -
Chmo13g00772 195 SUPERFAMILY Mss4-like 71 194 IPR011057 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00772 K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
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Event-related genes

Select Gene_1 Gene_2 Event_name
226228 Chmo15g00652 Chmo13g00772
238968 Chmo13g00772 Chmo15g00652
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:38636740 Chmo14g00057 Chmo-Chr14:2854035 dispersed
Chmo Chmo-Chr13:38636740 Chmo14g00798 Chmo-Chr14:36432400 wgd
Chmo Chmo-Chr13:38636740 Chmo15g00652 Chmo-Chr15:35652404 wgd