AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00776 ATGTCTGGGAGGAATCGTGGACCTCCGCTTCCGATGAAAGGTGGACCACATGGTGGAATGCCACCTATTCACGAGCCTCCGTTTGGTAGGAATTTAGGTCCTATGCCTCATCCCGCTTTGCTTGAAGAGATGCGTGAAGCACAGTTTCAGATGGCTCATCACAGACAAATCCCACCTCATCCTGGTATTTTCGAGGAGCGGTTAGCAGCTCAACATCAGGATATTCAGGCGTTATTGGTTGACAATCAGCGGTTAGCTGCGACCCATGTTGCACTCAAGCAGGAATTGGAAGCTGCGCAACATGAGCTTCAACAAACAGATCATTTTGCTCGGAATTTTATAATGGAGAAGGATATGCAATTGAGGGAGTTGTATGAGAAGTCGGCAAAAATGGAACATGATTTGCATGGTGTGGAAGGCATGCGAGCAGAGCTTATGCAAGTGCATGCTGATGTTAAGGAGTTGACCGCTACACGTCAGAAACTTACTGCTCAGGTGCAGGCTATGACTCAAGATCTTGGCAGAGCTAATGTGGATTTGCAGCAAGTTCCGGCACTGAAGTCGGAAATTGGAGGGCTGAGACAGGAATTGCAGCGCGCGAGGGCTGCAATTGAACAGGAGAAGAAGGGGCATGCAGAGAACTACGAGCATGGTCAAGTGATGGAAAAGAATTTACTCACTATGGCTCGAGAGCTGGAAAAGTTGCGTGCTGAGATGGCTAATGCTGAAAAAAGGGCTCGCGCGACTGCAGCAACAGCGAATCCAAATCCAGGCTATAACCCAAATTATGGCAATCCTGAAGCTAACTATGCAGGGAACCCTTACCCTGAAGCCAACTATGCAGGGAATCCTTACCCTGCAAATTATGGCATGAGCTCTACGAATCAAATAAATCCTGTGCAGCCTGGTGTGGAAGCTTATCCTCAGTATGTGCCTGGACCTGGATCTTGGGGCACGTATGATATGCAACGGGCCCAGGGACACAGATAG 990 48.79 MSGRNRGPPLPMKGGPHGGMPPIHEPPFGRNLGPMPHPALLEEMREAQFQMAHHRQIPPHPGIFEERLAAQHQDIQALLVDNQRLAATHVALKQELEAAQHELQQTDHFARNFIMEKDMQLRELYEKSAKMEHDLHGVEGMRAELMQVHADVKELTATRQKLTAQVQAMTQDLGRANVDLQQVPALKSEIGGLRQELQRARAAIEQEKKGHAENYEHGQVMEKNLLTMARELEKLRAEMANAEKRARATAATANPNPGYNPNYGNPEANYAGNPYPEANYAGNPYPANYGMSSTNQINPVQPGVEAYPQYVPGPGSWGTYDMQRAQGHR 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00776 329 Coils Coil 82 102 - -
Chmo13g00776 329 Coils Coil 190 214 - -
Chmo13g00776 329 Coils Coil 145 172 - -
Chmo13g00776 329 MobiDBLite consensus disorder prediction 1 28 - -
Chmo13g00776 329 MobiDBLite consensus disorder prediction 14 28 - -
Chmo13g00776 329 Coils Coil 225 252 - -
Chmo13g00776 329 PANTHER PROTEIN FLX-LIKE 2 1 324 IPR040353 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00776 K27811 protein FLX/FLXL
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Event-related genes

Select Gene_1 Gene_2 Event_name
226230 Chmo15g00662 Chmo13g00776
238970 Chmo13g00776 Chmo15g00662
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr10:217083172 Chmo13g00776 Chmo-Chr13:38840514 dispersed
Chmo Chmo-Chr13:38840514 Chmo1g01813 Chmo-Chr1:87616899 dispersed
Chmo Chmo-Chr15:36025549 Chmo13g00776 Chmo-Chr13:38840514 transposed
Chmo Chmo-Chr13:38840514 Chmo14g00790 Chmo-Chr14:36112587 wgd
Chmo Chmo-Chr13:38840514 Chmo15g00661 Chmo-Chr15:36023952 wgd