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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00846 ATGGCTCAAGAAGATCATACTCTTAGGTGTAGTAATAGCAGTAGATTGTCGAAAAAATCCAAGAAGGTGCCACAAAGAGGAATGGGTGTGGCTCAGCTTGAGAAGTTAATATTAGAAGAACAACAAAAGAAAGATGTTGTTGTTATGACACCTAATTTGACTAGTTTTAGGCCACCCATGATTCCTTTACCGCCGCCATTGCCACCTAATGATCGCCCTTTGATCACAAGATCTGAGGCTATGAATGGTGTTTTTCTGTCTAAGCCAACAAATAGTGGTAGCGGTGGTGGTAATAATACTAGTAGGTTATGGACATGTAGTGAGAATCCGAATCCAAACCAGAATCGGGCATTGGACCACCGTGGGTATGCGGTCACTATGCCGACAAATCTAGGTGGTTTGCCATATGAATCCAACGCGCTTGTTTGGCCACCACCAGTCCCTAGATCACATTTTCAACAACCTAGTACATCATCTATGATGGAGCCCCCTTCAAACCAAAGCTATTGTGGCAACAAGTATTCGCCATTGTGGCCAGACGAAGAGAAGATTGTTTGCAAGAAGAGATCATACCCTTTTTTGGTTGATAATATGCCGATACCCTCTTTCAATTGCAAATTTCCTTCTGCTTATGTCTCCCCAATCACAAGATTTGATGAATCAACTTCTTGTAGCAATGGATGCACTACTAGTTTAGAGCGCATGGTTCCTATTTTCAGGGTCAAACAAAAGATCCATCTGGAGTGGAATGGTCAAATCATCAGCAACTGCATAGTTTCTTTCCAGCAGCAAAGACTAATGGAAACAACAATGATGAAGCAGTGGAACATGTTGATCTCAGTTTGA 846 42.08 MAQEDHTLRCSNSSRLSKKSKKVPQRGMGVAQLEKLILEEQQKKDVVVMTPNLTSFRPPMIPLPPPLPPNDRPLITRSEAMNGVFLSKPTNSGSGGGNNTSRLWTCSENPNPNQNRALDHRGYAVTMPTNLGGLPYESNALVWPPPVPRSHFQQPSTSSMMEPPSNQSYCGNKYSPLWPDEEKIVCKKRSYPFLVDNMPIPSFNCKFPSAYVSPITRFDESTSCSNGCTTSLERMVPIFRVKQKIHLEWNGQIISNCIVSFQQQRLMETTMMKQWNMLISV 281
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00846 281 PANTHER OS01G0212500 PROTEIN 10 226 IPR040356 GO:0003700(InterPro)
Chmo13g00846 281 MobiDBLite consensus disorder prediction 1 27 - -
Chmo13g00846 281 MobiDBLite consensus disorder prediction 86 109 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00846 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
46220 Chmo13g00846 Chmo1g02051
216422 Chmo13g00846 Chmo14g00823
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:43175037 Chmo3g01880 Chmo-Chr3:87240373 dispersed
Chmo Chmo-Chr1:100888590 Chmo13g00846 Chmo-Chr13:43175037 wgd
Chmo Chmo-Chr13:43175037 Chmo14g00823 Chmo-Chr14:39383932 wgd
Chmo Chmo-Chr13:43175037 Chmo2g01823 Chmo-Chr2:85619309 wgd