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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g00930 ATGCCACGTGGCATCTTCTCCTGTTTCCGCCACCGCACCTCAACCACACCCACCACCTCATCCGACCCAACTCCCATAATAACAGGACCAGGACCAGTAGTTCTTGAACTATTCACATCACAAGGATGTGCCACGTCACCATCAGCAGAACTACTGTTCTCACGTATAGGCAGAGGTGATTTTGACCATGAAGTACCTCCTGTGATCATATTGGTGTACCATGTTGATTACTGGGATTATAATGGGTGGAAAGATCCTTTTGGGTCGAGTCAATGGACTGTTAGACAGAAAGGTTACGTTGAGTTGTTTAATCTTGACACCATGTTTACTCCACATGTTGTTGTTCAAGGGGTTAAGCAGTGTATTGGTAGTGATGAAGATGGTGTTATGGAGTGTATTAAGGGTGTGTCTAGATACCCTTCGCCTGCGTTTGAGGCAACATTCGAGAGACCTACACCAAAATCCTTACAAATCACCTTAAAAGGAGCTTTAAGGGCCAAACTAGATGGTGTGGGAGCAGACATCATGGTGGCACTTTGTGAGAGCGGTCTTGTAACCGACTGCCAAGATGGAGTCAACAAAGACAGAATGCTAGCCAACGATTTCGTGGTCAGAAAGCTCACAAAGCTCTGCTCCATCGACAACCTTCCTCCTAAAAAGATAATTACAGGAAGCCTCGAATGTGACCTTTGGCAAGGTTTTAACAGCACCAAATGTGGCATCGTTGTGTTTGTGCAGCAACATGGGACGCGCCATATTTTTGGGTCCCAGCGGATTCAACTACCTGCAGATATCTGA 798 46.12 MPRGIFSCFRHRTSTTPTTSSDPTPIITGPGPVVLELFTSQGCATSPSAELLFSRIGRGDFDHEVPPVIILVYHVDYWDYNGWKDPFGSSQWTVRQKGYVELFNLDTMFTPHVVVQGVKQCIGSDEDGVMECIKGVSRYPSPAFEATFERPTPKSLQITLKGALRAKLDGVGADIMVALCESGLVTDCQDGVNKDRMLANDFVVRKLTKLCSIDNLPPKKIITGSLECDLWQGFNSTKCGIVVFVQQHGTRHIFGSQRIQLPADI 265
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g00930 265 PANTHER - 27 265 IPR010634 -
Chmo13g00930 265 Pfam Protein of unknown function (DUF1223) 34 246 IPR010634 -
Chmo13g00930 265 SUPERFAMILY Thioredoxin-like 30 261 IPR036249 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g00930 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
216445 Chmo13g00930 Chmo14g00883
226284 Chmo15g00819 Chmo13g00930
239024 Chmo13g00930 Chmo15g00819
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:48552556 Chmo2g01611 Chmo-Chr2:74442287 dispersed
Chmo Chmo-Chr13:48552556 Chmo14g00883 Chmo-Chr14:42799969 wgd
Chmo Chmo-Chr13:48552556 Chmo15g00819 Chmo-Chr15:46828007 wgd