AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01044 ATGAAGGTTCAGTTGACTCGTAATTTAGCCTCATCGTTAAATCACCGCATATCTTCAATTAGCTCCTTTCGTCGTAATAGTTTTAGTTTAAGTCGGTTTAGGTTTTCTACTGTTGTTGATTCGTTACAAGAGGAAAAAATGGGTTCGGAGGAGATTGAGTGGCCTGCGAATAAAGTTAGAGATACTTTTATTAAGTTTTTTGAAGAGAGGAATCATGTTTACTGGAAATCGAGCCCTGTCGTTCCGGTTAATGATCCTACGCTTTTGTTCGCTAATGCCGGTATGAATCAATATAAGCCTATCTTCTTGGGTACTGCTGATCCGAACACTTCTTTGAGCAAATTGACTCGTGCTTGCAACACCCAGAAGTGTATCCGAGCAGGTGGGAAGCATAATGATCTTGATGATGTTGGCAAAGACACTTATCATCACACTTTCTTTGAAATGCTTGGTAACTGGTCATTTGGTGATTATTTTAAAAAGGAAGCTATTGGATGGGCATGGGAGCTTCTCACAACCGTTTATAAGCTGCCAACTGATCGAATATATGCTACTTATTTTGGCGGTGATGAGAAATTGGGCCTTCCCGCTGATAATGAAGCCAGAGATATATGGCTTCAATATCTCCCACCTGCACGAGTTTTGCCTTTTGGTTGTAAGGACAACTTTTGGGAGATGGGTGATACTGGACCTTGTGGACCCTGTACTGAAATACACTTTGATAGAATTGGTGGTCGTGATGGTGCACATTTGGTTAACAATGATGACCCCACATTGATTGAAATCTGGAATAACGTGTTCATTCAGTTTAACAGGGAAGCTGATGGTTCTTTGAAACCTCTCCCTGCCAAACACGTGGATACTGGACTGGGTTTCGAAAGATTGACATCAATTCTTCAGAACAAGTTGAGCAACTATGATACTGATGTCTTTCTACCTATTTTTGATGCTATTCAAAAGGCAACTCATGCCAGAGCTTATACAGGCAAAGTGGGGCCAGATGACAAGGATGGCATTGACATGGCATACAGAGTTGTTGCTGATCACATCCGAACTCTTTCATTTGCCATAGCCGATGGCTCTTGTCCAGGAAATGAAGGGCGTGAATATGTTTTACGACGCATTCTTCGCCGTGCAGTACGTTATGGAAGAGAAGTTTTGAAAGCAGAGCAAGGATTTTTCAACGGATTGGTAAAAGTTGTGGTGGATGTTATGAGCCATGTCTTTCCTGAGCTAAAGCAACACGAGACACGCATTAGAGAGATTATAGCTGAAGAGGAAGCAAGTTTTGGGAGGACGTTACTTCATGGAATTGAGAAGTTTAAAAGGACGGTTCAAGATACTCAGGGAAAAATTATTAGTGGACAGGATGCATTTGTGTTGTGGGATACTTTTGGGTTTCCATTGGATCTAACTCAGTTGATGGCAGAAGAAAGAAATTTAGTGGTTGATGTTGAGGGTTTTAATCTCGCTATGAGTGAAGCTAGAGAAAGATCAAGGAGTGCTCAGAATAAGCAATCTGCTGTTTCGATTGTGATGGATGCAGACGCTACCTCAGCACTACATAAGAGAGGGGTGGCTACAACAAATGATAGTTTCAAATATAATTGGTTTGAGGACCACAAAAGTGTGATAAAAGCCATTTACACGGGTAGTGAGTATGTGGAACGTGCTGAGGCTGGTGTTGATGTGGGTATAATTCTTGAGAGCACAAGTTTCTATGCTGAGCAAGGTGGTCAGATATTTGATACTGGACTACTTGGAGGCCCCTCTGGATCATTCGAGGTTTCTAATGTTCAAGTTTACGGTGGTTTTGTGATTCATCTTGGTCAAGTTACTGGAGAATCTACCAAATTTCATGTTGGCGATGAAGTAATCTGTAAGGTTGATTATGGAAGGCGTCAACGCATCGCTCCCAACCATACCTGTACACACATGTTAAATTTTGCTCTCAAGGAAGTACTTGGGGATCACATCGACCAAAAAGGATCCATTGTTCTCCCAGAAAAATTAAGATTTGACTTTTCCCATGGGAAGCCTGTAAAGCCAGATGATCTTCGCAGAATTGAATCCATTGTAAATGAACAAATTAAAGCTGAATTAGAGGTTTCTGCAAAGGAGGCTAGCCTTGCTGATGCAAAACGAGTAAATGGATTGCGAGCTGTTTTTGGTGAAGTGTATCCCGATCCAGTTAGAATTGTCTCAATTGGTCGAAAAGTGGATGAACTATTGGCTGATCCTGAAAATAAAGAATGGGCGTCCATATCTGCAGAGCTCTGTGGAGGGACTCACATATCCAATACACGAGAGGCCAGGGCATTTGCTCTTTTGTCCGAGGAGGGAATTGCCAAGGGGATCCGAAGAGTTACTGCTGTAACAACAGAATATGCTTTTGAAGCTATTAAAAAAGCAGCTGAACTTGAACAAGAAGTCGATCAGGCATCAACTCTGGAAGGAAACCTTCTTGAGCAGAAAGTCACCTTTTTAAATGGTCAAGTAGAGTCTGCAGCTATTCCAACAGCAAAGAAAGCCGATCTTAAGGCAAAAATTTCCATTCTTCAGAATCAAGTAATAAGAAACAAAAGGAGGATTGCTGAAGAAAACATCCGGAATGCTGTTGCATCCGTCACTGCAGCAGCGGAAGCTGCCATTGCTGAGGGAAAGGCATTCTGCATTTCCCATGTTGCTGTAGGATCTGATACTGCTGCTATTCGCGAAGCAGTTGTTAAAGTCATGGAACAAAAGGGTATGGCAGTGATGGTTTTTAGCACTGATGAACAATCAAAGAAGGCCTTGGTTTGTGCTGGTGTGCCTGAGCGAAGCAATCAAAGCAACAACCTGAAGGTTTTAGAGTGGCTGAAGGAGGCATTGAAGCCGTTAGAAGGCAAAGGTGGTGGTGGGAAAGGCGGTCTTGCGCAAGGCCAGGGACCCGTTATAACACATGTGGACGAGGCAATTGACATCGCCAAGTCATTTGCGGCACTCAGGCTGGGATAA 2997 42.68 MKVQLTRNLASSLNHRISSISSFRRNSFSLSRFRFSTVVDSLQEEKMGSEEIEWPANKVRDTFIKFFEERNHVYWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTSLSKLTRACNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTTVYKLPTDRIYATYFGGDEKLGLPADNEARDIWLQYLPPARVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGGRDGAHLVNNDDPTLIEIWNNVFIQFNREADGSLKPLPAKHVDTGLGFERLTSILQNKLSNYDTDVFLPIFDAIQKATHARAYTGKVGPDDKDGIDMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGREVLKAEQGFFNGLVKVVVDVMSHVFPELKQHETRIREIIAEEEASFGRTLLHGIEKFKRTVQDTQGKIISGQDAFVLWDTFGFPLDLTQLMAEERNLVVDVEGFNLAMSEARERSRSAQNKQSAVSIVMDADATSALHKRGVATTNDSFKYNWFEDHKSVIKAIYTGSEYVERAEAGVDVGIILESTSFYAEQGGQIFDTGLLGGPSGSFEVSNVQVYGGFVIHLGQVTGESTKFHVGDEVICKVDYGRRQRIAPNHTCTHMLNFALKEVLGDHIDQKGSIVLPEKLRFDFSHGKPVKPDDLRRIESIVNEQIKAELEVSAKEASLADAKRVNGLRAVFGEVYPDPVRIVSIGRKVDELLADPENKEWASISAELCGGTHISNTREARAFALLSEEGIAKGIRRVTAVTTEYAFEAIKKAAELEQEVDQASTLEGNLLEQKVTFLNGQVESAAIPTAKKADLKAKISILQNQVIRNKRRIAEENIRNAVASVTAAAEAAIAEGKAFCISHVAVGSDTAAIREAVVKVMEQKGMAVMVFSTDEQSKKALVCAGVPERSNQSNNLKVLEWLKEALKPLEGKGGGGKGGLAQGQGPVITHVDEAIDIAKSFAALRLG 998
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01044 998 FunFam Alanine--tRNA ligase 528 628 - -
Chmo13g01044 998 Pfam DHHA1 domain 846 992 IPR003156 GO:0003676(InterPro)
Chmo13g01044 998 Gene3D - 885 993 - -
Chmo13g01044 998 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 307 510 IPR018162 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0006419(InterPro)
Chmo13g01044 998 FunFam Alanine--tRNA ligase, cytoplasmic 630 805 - -
Chmo13g01044 998 Coils Coil 797 824 - -
Chmo13g01044 998 NCBIfam alanine--tRNA ligase 58 976 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Chmo13g01044 998 Hamap Alanine--tRNA ligase [alaS]. 54 997 IPR023033 GO:0004813(InterPro)
Chmo13g01044 998 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 54 803 IPR018165 GO:0003676(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Chmo13g01044 998 FunFam Alanine--tRNA ligase 885 993 - -
Chmo13g01044 998 Gene3D - 526 629 - -
Chmo13g01044 998 Gene3D - 630 806 - -
Chmo13g01044 998 Gene3D Bira Bifunctional Protein; Domain 2 55 303 IPR045864 -
Chmo13g01044 998 CDD AlaRS-core 56 302 - -
Chmo13g01044 998 SMART tRNA-SAD-4 731 790 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Chmo13g01044 998 Pfam tRNA synthetases class II (A) 58 631 IPR018164 GO:0000166(InterPro)|GO:0004813(InterPro)|GO:0005524(InterPro)|GO:0006419(InterPro)
Chmo13g01044 998 SUPERFAMILY ThrRS-AlaRS common domain 629 801 IPR018163 GO:0000166(InterPro)
Chmo13g01044 998 FunFam Alanine--tRNA ligase, cytoplasmic 53 303 - -
Chmo13g01044 998 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 731 789 IPR012947 GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0043039(InterPro)
Chmo13g01044 998 SUPERFAMILY Translation proteins 555 629 IPR009000 -
Chmo13g01044 998 PANTHER ALANYL-TRNA SYNTHETASE 50 994 IPR050058 GO:0002161(PANTHER)|GO:0004813(PANTHER)|GO:0005739(PANTHER)|GO:0006419(PANTHER)|GO:0009507(PANTHER)
Chmo13g01044 998 PRINTS Alanyl-tRNA synthetase signature 368 381 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Chmo13g01044 998 PRINTS Alanyl-tRNA synthetase signature 287 300 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Chmo13g01044 998 PRINTS Alanyl-tRNA synthetase signature 260 271 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Chmo13g01044 998 PRINTS Alanyl-tRNA synthetase signature 344 360 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Chmo13g01044 998 PRINTS Alanyl-tRNA synthetase signature 132 143 IPR002318 GO:0000166(InterPro)|GO:0005737(InterPro)
Chmo13g01044 998 SUPERFAMILY Class II aaRS and biotin synthetases 55 306 IPR045864 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01044 K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
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Event-related genes

Select Gene_1 Gene_2 Event_name
46300 Chmo13g01044 Chmo22g05202
46301 Chmo13g01044 Chmo23g05159
46302 Chmo13g01044 Chmo24g05225
216493 Chmo13g01044 Chmo14g00983
226327 Chmo15g00914 Chmo13g01044
239067 Chmo13g01044 Chmo15g00914
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1297366 Chmo Chmo12g01635 Chmo-Chr12:88590605 Chmo13g01044 Chmo-Chr13:54040137
1301127 Chmo Chmo13g01044 Chmo-Chr13:54040137 Chmo22g05202 Chmo-Chr22:306144316
1445184 Chmo Chmo26g00241 Chmo-Chr26:13080799 Chmo13g01044 Chmo-Chr13:54040137
1464785 Chmo Chmo3g02624 Chmo-Chr3:131504201 Chmo13g01044 Chmo-Chr13:54040137
1493278 Chmo Chmo13g01044 Chmo-Chr13:54040137 Chmo14g00983 Chmo-Chr14:48602853
1494479 Chmo Chmo13g01044 Chmo-Chr13:54040137 Chmo15g00914 Chmo-Chr15:52903597
1497408 Chmo Chmo13g01044 Chmo-Chr13:54040137 Chmo22g05215 Chmo-Chr22:307155711
1497590 Chmo Chmo13g01044 Chmo-Chr13:54040137 Chmo23g05159 Chmo-Chr23:300777979
1497727 Chmo Chmo13g01044 Chmo-Chr13:54040137 Chmo24g05225 Chmo-Chr24:303081998