AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01082 ATGAACATCGAAATACACGGTCGCCACGCCCTACTCTTCGACGACGACGCCACATCAGCTTTCGTAAACTCCGAAGACGCACTCGTCGAATGGAACTCACTCTTAATCGACCGATACGACGTCCGGCATCTCCTCTCCGGCCCTCCGCCGTCACGACGACGGCGTAATCCACAAACGTCATCACATTCGTCTTCTGCTGATGCTGAGATTGATTATGAACGGTATCTGGATTTACCGTCTGAAAATGAAGAGCACGAAGAAGATGCAAATCCGGAACCTGTGGGTGGATTCAATGCTGTTCCTTTTTCTTATGGAAATTACGAGGATTCTAGTGAACAAAAGATTGCTGAGACTGAATCGGAGATACCTCAATTTCACCCCCCTTTCCCTGTTCCTGACAGTCTGGTTCAACACTTGCCTTCTACAGAGAAAGTACATCAGATTATTGCAAGGACCGCTCTTTTCGTCAGTAAAAATGGAGGTCAATCTGAGATTGTTTTGAGGGTGAAGCAAGGAGACAATCCTACCTTTGGGTTCTTAATGCCTGACCATCACCTACATCCGTACTTCAGGTTTCTTGTGGATCACCAAGATCTTCTTCAGTCAAAAGAGGACAAACAGACTGAAAATGAGGAAACATCCAATACTGGAGCATTGTCTTTACTTGGTTCTGTTTATGGCACTGGGGAGGATGATGATGTTGGAACAGAGCATGCATCATCATCATCTAAAGAGGTCGTGGATGTAGATGCTGCAATGTTGCCAGCTGGTAAAGACGAGCCTGTTTCAAAGCAGTCGATTTCTTCCAAGGAAGATGTTCTTATAATAAAAAGGAATTCTTTATCAAATGTTTTGAAGCCTGTACGTACTCGCAGTCTGAGGAAAGATGATTTCTCAGGTTCAGTCTCTGCTGTTCCTGATAAGTTACGTGCTTCTTCTCTTCCCCCAATTCCCAAGAATGAGCATATTCTTGTGGATCCTTCATCCGAAATGAAACTGCTGGTTGACAAGATAGTTGAGTTCATCATCAAGAATGGGAGGCAGTTTGAGACAGTACTTATGGAACAAGACCGTGGTCATGGAAGATTCCCATTCTTAATCCCATCTAATATATTTCATCCGTACTATTTAAAGGTTCTCCAGAAAGCCCAGGAGACGAAGTTAACGGTGAAGAGTTTCCACAATGAGAAGGAAGTTTCCAGAGGACATATCTCAAACAAGAAACTTAAGGTTGATGAGAAATCTTTGATGGAACCTGATGATATACCACTTGATTCTGAAAGGAAAGAGAAGTTTAAGATGGTAATTAACAAATCTAAAAGGGAAGAATCAGATGTGCCAGTTAAGGCCACAGAACAGTCACCTGGAATCCAGGTGGATGCCACTCAAGCAGCAGCTATTCTTCAGGCTGCTACAAGAGGCATTAAGCGTCCAAATTTGGGAAATTTATTTGGACAACCCTCTAATGTAGCCAATTCCTCGGACACACATTTGACTCATGAGCAGAAATTGAAGGCTGAGAGGCTTAAAAGAGCTAAGATGTTTGTGGCTCAGCTGAAAAGTGGAGCTGCTCCATCAAAAACTGAACCCTCGCGTGGCGTATCAGCTGAGCCACAAGGATCAGCGGCTGCAAAAAGTCAGAGCACAACCCCTATAGATTTTCATACTAAAGACGAGATAGTAAAAACAGAGAAGATAGTAAAAACAGAAGAAGAACATTTGAATGATGAAAAACGAGCAAAGAGGAAATACCGTGCTAGGAAAGATGAAGAAGGTGACACATCAGAAGATGACGACGACGTGGTTGATGAGAGAGAAGAAAAAAGGTCACATAGACACCGTATAGAAAAACATCAATCGCGTGATCATGTAAAAAAACACCGATCACATCGTTCTTCTCGTAAACATGATGAAGAAAGGGATCGTGATTACTCGAGGAAAAATAAACATCAATCATCTAGCTCTTACGAAGATGATGAACACGAAAGTGAACATGAATATGCCAGAAAGAAGCACCGGTCTCATCGTTCTTCACATGATGAAGATGAAGTTGACAGTGACGATAAATATTCGAGGAAAAAGAGAACACATAGATCTCACAAGTCTTCTCATCACAGAAGAGATAAACATAAGCATAGGAAAAGTCACTCTTATAGGCATAGACAGAAGCCTGATGTCTCTTCAGAAGAAGAGCTAAGGGATCATAATAAGGCTGAAAAACATAAACAGAGTTCAAATTCGGAGAAAGAAGAACTGGAAGAGGGAGAGATCAGTTCGAAATTGTCGGGTCAGTCCAGAGGGGGTCCATTTGTTAATGGTGCTAGCAGAGAACCATCGGTCGATGTATCGAGTCAAGATAGGAGACCACTGACTCAACCTGTAGAGACAGCTGAGGTTCCTGATGATCTTAGGGCCAAAGTGAGAGCAATGTTGATGTCCACATTGTAA 2448 42.69 MNIEIHGRHALLFDDDATSAFVNSEDALVEWNSLLIDRYDVRHLLSGPPPSRRRRNPQTSSHSSSADAEIDYERYLDLPSENEEHEEDANPEPVGGFNAVPFSYGNYEDSSEQKIAETESEIPQFHPPFPVPDSLVQHLPSTEKVHQIIARTALFVSKNGGQSEIVLRVKQGDNPTFGFLMPDHHLHPYFRFLVDHQDLLQSKEDKQTENEETSNTGALSLLGSVYGTGEDDDVGTEHASSSSKEVVDVDAAMLPAGKDEPVSKQSISSKEDVLIIKRNSLSNVLKPVRTRSLRKDDFSGSVSAVPDKLRASSLPPIPKNEHILVDPSSEMKLLVDKIVEFIIKNGRQFETVLMEQDRGHGRFPFLIPSNIFHPYYLKVLQKAQETKLTVKSFHNEKEVSRGHISNKKLKVDEKSLMEPDDIPLDSERKEKFKMVINKSKREESDVPVKATEQSPGIQVDATQAAAILQAATRGIKRPNLGNLFGQPSNVANSSDTHLTHEQKLKAERLKRAKMFVAQLKSGAAPSKTEPSRGVSAEPQGSAAAKSQSTTPIDFHTKDEIVKTEKIVKTEEEHLNDEKRAKRKYRARKDEEGDTSEDDDDVVDEREEKRSHRHRIEKHQSRDHVKKHRSHRSSRKHDEERDRDYSRKNKHQSSSSYEDDEHESEHEYARKKHRSHRSSHDEDEVDSDDKYSRKKRTHRSHKSSHHRRDKHKHRKSHSYRHRQKPDVSSEEELRDHNKAEKHKQSSNSEKEELEEGEISSKLSGQSRGGPFVNGASREPSVDVSSQDRRPLTQPVETAEVPDDLRAKVRAMLMSTL 815
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01082 815 ProSiteProfiles SURP motif repeat profile. 334 376 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 MobiDBLite consensus disorder prediction 634 692 - -
Chmo13g01082 815 MobiDBLite consensus disorder prediction 614 633 - -
Chmo13g01082 815 SUPERFAMILY Surp module (SWAP domain) 124 195 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 Gene3D Surp module 318 388 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 SMART surpneu2 332 385 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 SMART surpneu2 146 199 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 MobiDBLite consensus disorder prediction 532 554 - -
Chmo13g01082 815 Coils Coil 735 755 - -
Chmo13g01082 815 PANTHER SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT 3 798 IPR040397 GO:0000395(PANTHER)
Chmo13g01082 815 SUPERFAMILY Surp module (SWAP domain) 311 381 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 MobiDBLite consensus disorder prediction 45 71 - -
Chmo13g01082 815 MobiDBLite consensus disorder prediction 721 757 - -
Chmo13g01082 815 Gene3D Surp module 141 196 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 Pfam Surp module 147 195 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 Pfam Surp module 334 381 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 SMART DRY-EERY-2 1 108 IPR019147 -
Chmo13g01082 815 MobiDBLite consensus disorder prediction 777 791 - -
Chmo13g01082 815 Coils Coil 567 587 - -
Chmo13g01082 815 MobiDBLite consensus disorder prediction 520 802 - -
Chmo13g01082 815 MobiDBLite consensus disorder prediction 693 720 - -
Chmo13g01082 815 MobiDBLite consensus disorder prediction 52 66 - -
Chmo13g01082 815 MobiDBLite consensus disorder prediction 555 592 - -
Chmo13g01082 815 ProSiteProfiles SURP motif repeat profile. 148 190 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Chmo13g01082 815 Pfam Alternative splicing regulator 3 87 IPR019147 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01082 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
216501 Chmo13g01082 Chmo14g01017
226337 Chmo15g00949 Chmo13g01082
239077 Chmo13g01082 Chmo15g00949
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:55590739 Chmo14g01017 Chmo-Chr14:50673356 dispersed
Chmo Chmo-Chr13:55537247 Chmo13g01082 Chmo-Chr13:55590739 tandem