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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01107 ATGAGCATGGAAACAGAAAGTGTTGTAGCGAAGCTCAAGAGTTGTGGATTGTTTCGAACCAAAGGTCTTATTGGAGGCAAATGGGTTGATGCATACGACGAGAGGACCCTCGAGGTATTGTTTAACTTTCGATTCAGGTATAACTTACTGATTGAACACAAACAAGAACTTGCACAACTTATAACTTTGGAGCAAGGAAAACCACTAAGAGAAGCCATTGGGGAGGTGATATATGCTGCTAATTTCATTGAGTACTTTGCGGAGGAGGCAAAACGTGTTTATGGTGATATAATTCCATCGCCATATCCTGATCGCCGTCTGTTTGTTCTAAAACAGCCTGTTGGTGTCGTTGCTGCAATCACTCCATGGAATTTCCCCTTGGCAATGATTACTCGGAAGGCTGGACCTGCTCTTGCATGTGGGTGTACTGTGGTCATAAAGCCCTCTGAGCTCACACCATTAACCGCCTTAGCAGCAGTAGAGCTTGCCATTCAATCAGGAATCCCACCAGGTGTTTTAAATATTGTCATGGGAGATGCTCCTAGTATCGGAAAGGCTTTACTTGAGAGCCCACAAGTAATGAAGATAACGTTTACCGGCTCAACAGCAGTTGGAAAGAAATTGATGGCTGGTGCAGCCGAGACTGTCAAAAAGGTATCTCTTGAACTTGGTGGCAATGCACCTTGTGTAATCTTCGATGATGCTGACCTGGAAGTGGCATTGAAGGGGACCTTGTCAACTAAATTTCTTAATACTGGACAAGCATGTATATCAGTAAATAGATTACTTGTCCAAGAAGGCATATATGAGAAGTTTACAAACGCATTATCAAATGCTGTTCAGAACATTAAAGTTGGAAATGGCTTTAGTGAAGGTGTGGCCCAGGGACCACTTATCAACGAAGCTGCTGTCCAAAAGGTTGAATCATTTTTGCAAGATGCAATCTCTAAGGGAGCCAAAGTTCTTCTCGGTGGTAAGAGGCATAGCCTTGGCATGACTTTTTATGAGCCTACGATTATTGGTGATGTCAATAATGAGATGATCATAGCAAGGAAGGAAATATTTGGACCCGTCATACCTATTATACGCTTTAAAACGGAAGAAGAAGCTATCCAAATTGCTAACGACACTAATTCAGGTTTAGCTGCATACATATTTACAAACAGTATTAAGCGTTCATGGCGTGTATCTGAAGCTCTTGAATATGGTATGGTTGGAGTCAATGAGGGATCAATTTCAACAGAGGTGGCTCCATTTGGAGGTGTTAAGGAGTCTGGTTTAGGACGCGAAGGTTCTAAATATGGATTGGATGAGTATCTTGAAAATGTTGTTGCATTAACATTTGCGGCACTTCAGTTTTACTTTGAATTTGCGGCACTTCTGTTGGTGGTTTTGATGGTGGAAGGGGAGGAGGATGCCGCCGGAGAAGAGCTGGTCGGCGGTGGACTCGTGGAGCTGGGGTTGGGTTGTCCAGAATTCGAATTCGGGTGA 1491 43.33 MSMETESVVAKLKSCGLFRTKGLIGGKWVDAYDERTLEVLFNFRFRYNLLIEHKQELAQLITLEQGKPLREAIGEVIYAANFIEYFAEEAKRVYGDIIPSPYPDRRLFVLKQPVGVVAAITPWNFPLAMITRKAGPALACGCTVVIKPSELTPLTALAAVELAIQSGIPPGVLNIVMGDAPSIGKALLESPQVMKITFTGSTAVGKKLMAGAAETVKKVSLELGGNAPCVIFDDADLEVALKGTLSTKFLNTGQACISVNRLLVQEGIYEKFTNALSNAVQNIKVGNGFSEGVAQGPLINEAAVQKVESFLQDAISKGAKVLLGGKRHSLGMTFYEPTIIGDVNNEMIIARKEIFGPVIPIIRFKTEEEAIQIANDTNSGLAAYIFTNSIKRSWRVSEALEYGMVGVNEGSISTEVAPFGGVKESGLGREGSKYGLDEYLENVVALTFAALQFYFEFAALLLVVLMVEGEEDAAGEELVGGGLVELGLGCPEFEFG 496
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01107 496 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 47 442 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Chmo13g01107 496 SUPERFAMILY ALDH-like 16 441 IPR016161 GO:0016491(InterPro)
Chmo13g01107 496 FunFam Aldehyde dehydrogenase, putative 417 442 - -
Chmo13g01107 496 FunFam Succinate-semialdehyde dehydrogenase I 27 236 - -
Chmo13g01107 496 CDD ALDH-F5-SSADH-GabD 47 441 - -
Chmo13g01107 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 225 414 IPR016163 GO:0016620(InterPro)
Chmo13g01107 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 48 439 IPR016162 GO:0016491(InterPro)
Chmo13g01107 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 221 228 IPR029510 GO:0016491(InterPro)
Chmo13g01107 496 FunFam Succinate-semialdehyde dehydrogenase I 225 414 - -
Chmo13g01107 496 Pfam Aldehyde dehydrogenase family 48 441 IPR015590 GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01107 K00135 succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase [EC:1.2.1.16 1.2.1.79 1.2.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:57015389 Chmo15g00974 Chmo-Chr15:56615493 dispersed
Chmo Chmo-Chr13:57006563 Chmo13g01107 Chmo-Chr13:57015389 tandem
Chmo Chmo-Chr13:57015389 Chmo13g01108 Chmo-Chr13:57040441 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chmo23g04911 . 174 321 Aldehyde Dehydrogenase gene family AT3G24503 66.892 3.41e-67 209.0
Chmo13g02064 . 241 501 Aldehyde Dehydrogenase gene family AT3G24503 68.199 8.84e-133 382.0
Chmo17g05127 ACH,CSH 4 357 Aldehyde Dehydrogenase gene family AT4G36250 53.107 2.27e-139 403.0
Chmo6g02478 . 8 484 Aldehyde Dehydrogenase gene family AT4G36250 60.797 0.0 609.0
Chmo4g03137 . 8 484 Aldehyde Dehydrogenase gene family AT4G36250 59.958 0.0 603.0
Chmo24g02404 . 1 545 Aldehyde Dehydrogenase gene family AT3G66658 80.367 0.0 924.0
Chmo3g03088 . 150 298 Aldehyde Dehydrogenase gene family AT3G24503 60.403 4.79e-53 173.0
Chmo9g03145 . 1 538 Aldehyde Dehydrogenase gene family AT3G48000 76.34 0.0 871.0
Chmo22g04936 . 178 321 Aldehyde Dehydrogenase gene family AT3G24503 63.889 8.91e-58 185.0
Chmo12g04472 . 200 234 Aldehyde Dehydrogenase gene family AT5G62530 74.286 2.69e-09 52.8
Chmo23g00314 . 295 392 Aldehyde Dehydrogenase gene family AT3G24503 59.184 6.05e-36 126.0
Chmo14g01027 . 18 517 Aldehyde Dehydrogenase gene family AT1G79440 75.2 0.0 766.0
Chmo12g03646 . 174 335 Aldehyde Dehydrogenase gene family AT3G24503 66.049 1.74e-71 222.0
Chmo6g03099 . 5 501 Aldehyde Dehydrogenase gene family AT1G74920 78.471 0.0 850.0
Chmo4g03819 ACH,CSH 25 556 Aldehyde Dehydrogenase gene family AT5G62530 79.511 0.0 907.0
Chmo5g02906 . 8 484 Aldehyde Dehydrogenase gene family AT4G36250 60.168 0.0 605.0
Chmo25g02854 . 38 107 Aldehyde Dehydrogenase gene family AT1G74920 71.429 3.43e-27 102.0
Chmo6g03152 ACH,CSH 25 556 Aldehyde Dehydrogenase gene family AT5G62530 79.323 0.0 908.0
Chmo24g00792 . 207 308 Aldehyde Dehydrogenase gene family AT1G79440 76.471 3.18e-38 135.0
Chmo3g04911 CSH 1 496 Aldehyde Dehydrogenase gene family AT2G24270 88.911 0.0 931.0
Chmo23g01627 ACH,CSH 23 556 Aldehyde Dehydrogenase gene family AT5G62530 82.022 0.0 932.0
Chmo15g00974 . 18 517 Aldehyde Dehydrogenase gene family AT1G79440 75.4 0.0 767.0
Chmo15g00973 . 36 104 Aldehyde Dehydrogenase gene family AT1G79440 60.87 2.22e-24 92.8
Chmo8g03105 . 1 538 Aldehyde Dehydrogenase gene family AT3G48000 75.416 0.0 866.0
Chmo23g02514 . 1 545 Aldehyde Dehydrogenase gene family AT3G66658 80.55 0.0 925.0
Chmo3g00746 . 7 501 Aldehyde Dehydrogenase gene family AT3G24503 68.687 0.0 717.0
Chmoscaffold_1021g00007 . 89 241 Aldehyde Dehydrogenase gene family AT3G24503 62.092 6.92e-59 192.0
Chmo1g01464 . 74 154 Aldehyde Dehydrogenase gene family AT2G14170 34.483 1.54e-07 47.4
Chmo15g01232 ACH,CSH 86 606 Aldehyde Dehydrogenase gene family AT2G14170 82.6 0.0 903.0
Chmo8g00028 . 278 335 Aldehyde Dehydrogenase gene family AT3G48000 77.586 4.22e-23 95.5
Chmo4g03347 CSH 34 286 Aldehyde Dehydrogenase gene family AT1G79440 47.826 5.34e-60 195.0
Chmo4g03346 . 34 286 Aldehyde Dehydrogenase gene family AT1G79440 47.471 5.99e-59 192.0
Chmo23g02300 . 170 197 Aldehyde Dehydrogenase gene family AT5G62530 71.429 2.22e-08 53.5
Chmo20g03921 . 1 496 Aldehyde Dehydrogenase gene family AT2G24270 85.312 0.0 889.0
Chmoscaffold_1201_frag0ment_2_debrisg00001 . 1 496 Aldehyde Dehydrogenase gene family AT2G24270 89.113 0.0 933.0
Chmo14g01256 ACH,CSH 86 606 Aldehyde Dehydrogenase gene family AT2G14170 82.792 0.0 905.0
Chmo14g01592 . 7 501 Aldehyde Dehydrogenase gene family AT3G24503 68.081 0.0 709.0
Chmo1g02556 ACH,CSH 79 607 Aldehyde Dehydrogenase gene family AT2G14170 66.478 0.0 746.0
Chmo13g01106 . 36 525 Aldehyde Dehydrogenase gene family AT1G79440 70.408 0.0 703.0
Chmo13g01108 . 15 525 Aldehyde Dehydrogenase gene family AT1G79440 76.413 0.0 804.0
Chmo13g01107 . 34 516 Aldehyde Dehydrogenase gene family AT1G79440 68.944 0.0 661.0
Chmo5g03554 . 5 501 Aldehyde Dehydrogenase gene family AT1G74920 78.672 0.0 850.0
Chmo5g03615 ACH,CSH 25 556 Aldehyde Dehydrogenase gene family AT5G62530 79.511 0.0 911.0
Chmo12g00068 . 389 418 Aldehyde Dehydrogenase gene family AT4G36250 63.333 5.04e-06 44.7
Chmo10g03711 . 200 335 Aldehyde Dehydrogenase gene family AT3G24503 56.618 1.04e-36 144.0
Chmo11g03648 . 174 269 Aldehyde Dehydrogenase gene family AT3G24503 65.306 1.86e-38 132.0
Chmo26g01311 . 155 293 Aldehyde Dehydrogenase gene family AT1G79440 70.504 3.25e-55 180.0
Chmo22g01200 . 170 197 Aldehyde Dehydrogenase gene family AT5G62530 71.429 1.57e-09 53.1
Chmo12g04701 . 191 405 Aldehyde Dehydrogenase gene family AT2G24270 80.0 9.99e-124 362.0
Chmo2g00512 . 16 501 Aldehyde Dehydrogenase gene family AT3G24503 64.815 0.0 677.0
Chmo2g00511 . 7 441 Aldehyde Dehydrogenase gene family AT3G24503 68.736 0.0 622.0
Chmo22g01571 ACH 23 556 Aldehyde Dehydrogenase gene family AT5G62530 82.022 0.0 932.0
Chmo22g01592 ACH,CSH 23 556 Aldehyde Dehydrogenase gene family AT5G62530 82.022 0.0 932.0
Chmo7g00822 CSH 73 301 Aldehyde Dehydrogenase gene family AT3G48000 72.052 2.58e-113 337.0
Chmo9g00992 CSH 73 301 Aldehyde Dehydrogenase gene family AT3G48000 71.616 1.43e-113 334.0
Chmo14g02039 CSH 325 484 Aldehyde Dehydrogenase gene family AT1G44170 63.125 1.06e-71 224.0
Chmo19g03840 . 1 459 Aldehyde Dehydrogenase gene family AT2G24270 85.435 0.0 824.0
Chmo24g01963 . 332 416 Aldehyde Dehydrogenase gene family AT1G23800 57.647 8.25e-28 103.0
Chmo23g00686 . 67 148 Aldehyde Dehydrogenase gene family AT1G23800 76.829 2.44e-42 142.0
Chmo8g02822 CSH 1 269 Aldehyde Dehydrogenase gene family AT4G36250 55.39 9.81e-105 312.0
Chmo8g02821 ACH 286 483 Aldehyde Dehydrogenase gene family AT4G36250 56.061 1.69e-80 246.0
Chmo12g02981 . 304 458 Aldehyde Dehydrogenase gene family AT1G44170 43.636 1.21e-33 122.0
Chmo16g04864 ACH,CSH 4 483 Aldehyde Dehydrogenase gene family AT4G36250 53.333 0.0 550.0
Chmo3g02515 ACH,CSH 79 607 Aldehyde Dehydrogenase gene family AT2G14170 66.478 0.0 746.0
Chmoscaffold_1672_frag0ment_1g00004 . 39 139 Aldehyde Dehydrogenase gene family AT3G24503 58.416 2.63e-33 118.0
Chmo13g01786 CSH 94 146 Aldehyde Dehydrogenase gene family AT3G24503 41.509 1.85e-06 47.4
Chmo10g01152 . 234 405 Aldehyde Dehydrogenase gene family AT2G24270 84.302 6.37e-105 308.0
Chmo22g02539 . 1 545 Aldehyde Dehydrogenase gene family AT3G66658 75.78 0.0 855.0
Chmo1g00821 . 6 501 Aldehyde Dehydrogenase gene family AT3G24503 64.113 0.0 681.0
Chmo1g00820 . 78 501 Aldehyde Dehydrogenase gene family AT3G24503 67.217 0.0 600.0
Chmo1g00818 . 7 501 Aldehyde Dehydrogenase gene family AT3G24503 68.081 0.0 709.0
Chmo1g00819 . 3 501 Aldehyde Dehydrogenase gene family AT3G24503 68.136 0.0 712.0
Chmo6g03063 . 1 427 Aldehyde Dehydrogenase gene family AT3G48000 78.837 0.0 706.0
Chmo9g00237 . 290 351 Aldehyde Dehydrogenase gene family AT2G24270 83.871 1.12e-27 102.0
Chmo5g03155 CSH 36 286 Aldehyde Dehydrogenase gene family AT1G79440 46.215 3.87e-56 185.0
Chmo26g00844 . 88 255 Aldehyde Dehydrogenase gene family AT1G74920 66.471 1.24e-72 226.0
Chmo4g01057 CSH 236 298 Aldehyde Dehydrogenase gene family AT3G24503 66.667 3.94e-22 86.7
Chmo4g01056 . 150 209 Aldehyde Dehydrogenase gene family AT3G24503 70.0 2.92e-24 92.0
Chmo17g02102 CSH 6 484 Aldehyde Dehydrogenase gene family AT1G44170 65.136 0.0 672.0
Chmo9g02919 ACH 124 483 Aldehyde Dehydrogenase gene family AT4G36250 57.778 1.15e-154 442.0
Chmo13g04271 . 4 501 Aldehyde Dehydrogenase gene family AT3G24503 68.273 0.0 711.0
Chmo22g05173 . 34 228 Aldehyde Dehydrogenase gene family AT1G79440 53.333 8.31e-64 202.0
Chmo16g02007 CSH 6 270 Aldehyde Dehydrogenase gene family AT1G44170 64.906 2.11e-127 369.0
Chmo2g04428 . 269 335 Aldehyde Dehydrogenase gene family AT3G48000 71.642 6.55e-23 96.3
Chmo11g04081 . 207 308 Aldehyde Dehydrogenase gene family AT1G79440 76.471 3.18e-38 135.0
Chmo7g02591 ACH,CSH 1 483 Aldehyde Dehydrogenase gene family AT4G36250 55.072 0.0 571.0
Chmo2g02328 ACH,CSH 79 607 Aldehyde Dehydrogenase gene family AT2G14170 66.855 0.0 749.0
Chmo4g03878 . 5 501 Aldehyde Dehydrogenase gene family AT1G74920 79.074 0.0 853.0
Chmo4g03910 . 1 538 Aldehyde Dehydrogenase gene family AT3G48000 80.407 0.0 909.0
Chmo4g03909 . 445 511 Aldehyde Dehydrogenase gene family AT3G48000 70.149 2.28e-25 97.8
Chmo21g04084 . 217 260 Aldehyde Dehydrogenase gene family AT3G48000 52.273 4.10e-10 51.6
Chmo5g03523 . 1 538 Aldehyde Dehydrogenase gene family AT3G48000 80.591 0.0 912.0
Chmo2g04556 CSH 1 496 Aldehyde Dehydrogenase gene family AT2G24270 89.315 0.0 934.0
Chmo21g04011 . 1 496 Aldehyde Dehydrogenase gene family AT2G24270 84.708 0.0 885.0
Chmo3g04224 . 47 167 Aldehyde Dehydrogenase gene family AT3G24503 59.504 1.11e-42 146.0
Chmo8g01028 . 67 148 Aldehyde Dehydrogenase gene family AT1G23800 76.829 2.44e-42 142.0
Chmo13g01402 ACH,CSH 86 606 Aldehyde Dehydrogenase gene family AT2G14170 82.792 0.0 905.0
Chmo17g02375 . 250 365 Aldehyde Dehydrogenase gene family AT5G62530 79.31 2.16e-59 203.0
Chmo24g04976 . 174 321 Aldehyde Dehydrogenase gene family AT3G24503 64.189 1.78e-61 194.0
Chmo4g03686 . 152 245 Aldehyde Dehydrogenase gene family AT3G24503 69.149 5.92e-44 147.0
Chmo4g03685 . 33 139 Aldehyde Dehydrogenase gene family AT3G24503 59.813 8.50e-39 133.0
Chmo1g00857 . 89 146 Aldehyde Dehydrogenase gene family AT3G24503 44.828 3.43e-09 54.7
Chmo7g01831 . 112 286 Aldehyde Dehydrogenase gene family AT1G74920 65.169 6.57e-74 234.0
Chmo7g02973 . 1 538 Aldehyde Dehydrogenase gene family AT3G48000 72.261 0.0 853.0
Chmo15g02179 CSH 325 453 Aldehyde Dehydrogenase gene family AT1G44170 65.116 3.18e-57 187.0
Chmo15g01592 . 7 501 Aldehyde Dehydrogenase gene family AT3G24503 68.081 0.0 709.0
Chmo15g02410 . 449 516 Aldehyde Dehydrogenase gene family AT3G48000 67.647 4.17e-27 102.0
Chmo18g02694 CSH 44 71 Aldehyde Dehydrogenase gene family AT1G79440 57.143 6.02e-06 43.9
Chmo18g01920 CSH 6 484 Aldehyde Dehydrogenase gene family AT1G44170 65.136 0.0 672.0
Chmo18g02426 . 112 255 Aldehyde Dehydrogenase gene family AT1G74920 74.658 8.02e-72 223.0
Chmo18g02128 . 250 365 Aldehyde Dehydrogenase gene family AT5G62530 79.31 3.23e-60 204.0
Chmo6g00919 CSH 236 298 Aldehyde Dehydrogenase gene family AT3G24503 66.667 1.22e-20 86.3