AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01114 ATGTCTTTTACAGTTATACCAAATCTCTCACCACCATCTTTCACTCGTTTTCATCATAAACCATCATCATTATCATCTTCTTTACCATCTACTTCTTGTTGTGTTAATAATAGTTATCAAAATCATGGTGAAATGGTTGTGCAGTCTTCTTCTGTTGAAACATCACCTCTTCGGGTTCGGGTTTCGCCACCTGAGGAGGATCCTAGGCAAGAGTTTTATGTTAATGTAGGAGTAGCTGTTAGGACTCTTAGGCATGATTTGCCTCTATTGTTCTCTGAGGATCTTGATTATGGTATTTACAGGGATGATATCACATTTGTTGATCCTCTCAACAAATTCACTGGTATAGACAACTACAAGCTCATTTTCAGGGCACTACGTTTCCATGGTCGAATACTATTCAAAGAGATCTCATTAGAGATTTTCAGGGTTTGGCAGCCATCTGAGAACCTAATTTTGATCCGTTGGAATCTTAAAGGAGTCCCTCGTGTTCCCTGGGAAGCCAAAGGCGAGTTCCAAGGCACTTCCCGTTATAAATTGGATCGAAAAGGCAAAATTTACGAGCATAAAGTTGATAATTTGGCTTTCAATTTCCCACACCAGCTTAAACCGGCTGTGTCTGTTCTTGACTTGGTGGCTGCTTCTCCTCCTGCAACACCTAATCCTACGTTTTCATGGAGCCCTTTGGATTCAACTTACTCGTCTTCATGGCTAGATTTCTATCGGGCGGTTAAGAACACGTTGGATCCTGGTCAAGATTATATGGTTTTACAAGATTGTCAACTAGCTGCAACTTGTTTATAG 804 40.67 MSFTVIPNLSPPSFTRFHHKPSSLSSSLPSTSCCVNNSYQNHGEMVVQSSSVETSPLRVRVSPPEEDPRQEFYVNVGVAVRTLRHDLPLLFSEDLDYGIYRDDITFVDPLNKFTGIDNYKLIFRALRFHGRILFKEISLEIFRVWQPSENLILIRWNLKGVPRVPWEAKGEFQGTSRYKLDRKGKIYEHKVDNLAFNFPHQLKPAVSVLDLVAASPPATPNPTFSWSPLDSTYSSSWLDFYRAVKNTLDPGQDYMVLQDCQLAATCL 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01114 267 Pfam Uncharacterized conserved protein (DUF2358) 79 189 IPR018790 -
Chmo13g01114 267 PANTHER RIKEN CDNA 2310061I04 GENE 22 213 IPR018790 -
Chmo13g01114 267 SUPERFAMILY NTF2-like 96 190 IPR032710 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01114 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
216511 Chmo13g01114 Chmo14g01033
226350 Chmo15g00982 Chmo13g01114
239090 Chmo13g01114 Chmo15g00982
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:57178003 Chmo20g02362 Chmo-Chr20:133911095 dispersed
Chmo Chmo-Chr13:57178003 Chmo14g01033 Chmo-Chr14:51836174 wgd
Chmo Chmo-Chr13:57178003 Chmo15g00982 Chmo-Chr15:56844343 wgd