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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01174 ATGTACCAACTTACTTATATAAAAGCTCTTACTCCCATACCAGAGCTGGATGAGGAAGCTGAAGACGAAGATGAAGAGAAAGATGAGGTATTGGAGCTAGAAGAGGAAGATAAAGAGGAAGACGACAAAGATGAACAATATACTTCATTACAGCTAGCAGAACACGATTGGCATGAGTCGACGGAACCTGTGCCCAAAATTGAAGCGAGTAAACCTGAAAACGCCCCACAAAATATAACCATTAAGGAGGAAATACCAAAGCCAAAAGGGCATTGA 276 41.3 MYQLTYIKALTPIPELDEEAEDEDEEKDEVLELEEEDKEEDDKDEQYTSLQLAEHDWHESTEPVPKIEASKPENAPQNITIKEEIPKPKGH 91
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01174 91 MobiDBLite consensus disorder prediction 12 91 - -
Chmo13g01174 91 MobiDBLite consensus disorder prediction 16 43 - -
Chmo13g01174 91 MobiDBLite consensus disorder prediction 44 66 - -
Chmo13g01174 91 Coils Coil 13 43 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01174 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
216525 Chmo13g01174 Chmo14g01071
226360 Chmo15g01015 Chmo13g01174
239100 Chmo13g01174 Chmo15g01015
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:60416994 Chmo14g01071 Chmo-Chr14:54852169 dispersed
Chmo Chmo-Chr13:60365347 Chmo13g01174 Chmo-Chr13:60416994 proximal