AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01180 ATGGAAACTGCAAAAGAACAGTTTTTGAAGGAATATGGTGAATCATATGGTTATGATCACAAGAACATTGATGATATTCGAGCTAATGAGTTTAAAAGACTTGATGGGAGTGTGTATTTGGATCATGGTGGTGCAACTTTGTATTCTGAGTTACAGATGGATGCAATATTTAAGGATCTTACTTCTAATGTTTATGGCAATCCTCACAGTCAAAGCAGCTCTAGCTTGGCTACCTCAGACATCGTAGAAGATGCTCGTCTTCAGGTTCTCAATATCTGTAATGCGTCTCCAAAAGAGTACAAGTGTATATTCACTTCTGGCGCAACAGCAGCTCTTAAACTCGTTGGTGAGGCTTTTCCTTGGAGCAGTCAGAGCACCTTCATGTATACAATTGAGAATCACAACAGTGTCCTTGGGATCAGAGAATACGCTCTTGATAAAGGGGCTGGGGCATTAGCAATAGACTTTGTGGAAGATACCGAATCTTCCTTTAAGGTTTTACAGCATCCGCTAAAGAAGCGAAGTGACGTTAGGACATTGGACAAAGAGCCTACTGATCATGCATACAATTTATTTGCGTTCCCCTCGGAGTGTAATTTCTCAGGAGCAAGGTTCAATCTTGATTTAATAGACAGGATTAAGGAAGATTCAGAACAATTATTGGAAGGTTCTGAACTTTCTAGGGGATGCTGGCTGGTTTTGCTTGATGCTGCAAAAGGATGTTCCACAGACCCTCCGGATTTATCAAAACATAAGCCTGACTTCGTTGCCATCTCATTTTACAAGCTTTTTGGCTATCCAACTGGACTTGGAGCTTTGATAGTTCGAAATGAAGCTGCAAAGTTACTAAAGAAGACCTACTTCAGTGGAGGTACAGTGGCTGCATCAATTGCAGATATCGACTATGTGAAAAGAAGAGAAGGTATTGAGGAATCATTTGAAGATGGAACACTATCGTTCATAAATATAGCATCTATTCGCCATGGATTTGAGATCCTCAATACTTTGACCACAATATCCATATCACGGCATACATCATCTCTTGCAAGATATACGAGAAATATGCTTTTGGCACTAAGGCATGCTGATGGGAAGGAAGTTTGCAAAATATATGGCATGGAGTATATAAAGGCAGTATATAGTGGACTTGGTCCTGTGGTTTCTTTCAACTTGAAGCGCCCTGATGGTTCTTGGGTTGGCCATCGTGAAGTGGAAAAATTAGCTTCCTTATCTGGAATTCAGCTACGGACAGGGTGCTTTTGCAATCCAGGTGCATGTTCCAAGTATCTTGGTTTATCTCATTCAGATCTTCTATCCAACATTGAGGCTGGACATGTTTGCTGGGATGATTATGATATATTGAATGGGAAACCTACTGGGGCCGTTAGAGTGTCTTTTGGTTATATGTCAACGTTTGAAGATGCTTGGAAATTCATGAACTTCATTGTAAGCTCATTTATCTTGTTGCCTAGCACTAGTAGACATCTTTCGCGAATAAGATCCAGCTCTATCCAGTCTGCACTAGAAGATTGCAGAACACCGACAAAACATCATCTTACGTCAATTGTTGTGTATCCAATAAAGTCATGTGCGGGATTCAGAGTGGATAGTTGGCCTCTAAGCAGTACTGGATTGCTATATGATCGAGAGTGGCTTCTCAAAAGCATGAATGGTGAAATTCTTACGCAGAAGAAGGTACCTGAAATGTACTTTATTGGCACAAAGATCGACCTCAAAACAGGAATACTCCATGTGGAATCTCCTCATTGCAAAGAGAAGCTGCTTATCGAACTTAAATCAAATCGCTTAGCTGCAGTAGAAGAAATCAATGTACATGCCCAAAGATATGAAGTTCTGGGCTATGATAATGAGATTGACGCTTGGTTCAGCAAAGCAGTTGGCCGGCCTTGTTATTTATTAAGATCTAGTTCCAGCAGCTGTATCCGCTTGAACAGGAACAAAAATACGGGCACATGCAGAGACGTGGATACCAGATTAAACTTCGTTAATGAAGCACAGATTTTACTCGTATCTGAGGAAAGCGTATCTGACCTCAATCATAGATTGAACTCAGTTAAAACCGAAGGACCTATTGGATTACCTACGGAAGTCGATGCAATGAGATTCCGGCCAAACCTTGTCATATCTGGTGGTGTTCCGTATGCTGAAGACAACTGGAGTGATCTTAAGATTGGAAGCAATCACTTCATGTCATTAGGCGGTTGCAACCGTTGCCAGATGATCAATATGAGTTATCAAGCTGGTGAGGCACAAAGATCAAATCAACCTCTAGCTACTTTAGCGGCATACAGGAGGGCAAAGGGGAAAATACTCTTCGGAATATTGTTGAGATATGAGTGTGAAAATGAGGTTAAGGAAGAAACGTCCTCATGGCTTCAAGTGGGGCAAGAAGTACACCCTAACGCAGCATGA 2433 41.31 METAKEQFLKEYGESYGYDHKNIDDIRANEFKRLDGSVYLDHGGATLYSELQMDAIFKDLTSNVYGNPHSQSSSSLATSDIVEDARLQVLNICNASPKEYKCIFTSGATAALKLVGEAFPWSSQSTFMYTIENHNSVLGIREYALDKGAGALAIDFVEDTESSFKVLQHPLKKRSDVRTLDKEPTDHAYNLFAFPSECNFSGARFNLDLIDRIKEDSEQLLEGSELSRGCWLVLLDAAKGCSTDPPDLSKHKPDFVAISFYKLFGYPTGLGALIVRNEAAKLLKKTYFSGGTVAASIADIDYVKRREGIEESFEDGTLSFINIASIRHGFEILNTLTTISISRHTSSLARYTRNMLLALRHADGKEVCKIYGMEYIKAVYSGLGPVVSFNLKRPDGSWVGHREVEKLASLSGIQLRTGCFCNPGACSKYLGLSHSDLLSNIEAGHVCWDDYDILNGKPTGAVRVSFGYMSTFEDAWKFMNFIVSSFILLPSTSRHLSRIRSSSIQSALEDCRTPTKHHLTSIVVYPIKSCAGFRVDSWPLSSTGLLYDREWLLKSMNGEILTQKKVPEMYFIGTKIDLKTGILHVESPHCKEKLLIELKSNRLAAVEEINVHAQRYEVLGYDNEIDAWFSKAVGRPCYLLRSSSSSCIRLNRNKNTGTCRDVDTRLNFVNEAQILLVSEESVSDLNHRLNSVKTEGPIGLPTEVDAMRFRPNLVISGGVPYAEDNWSDLKIGSNHFMSLGGCNRCQMINMSYQAGEAQRSNQPLATLAAYRRAKGKILFGILLRYECENEVKEETSSWLQVGQEVHPNAA 810
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01180 810 Gene3D - 54 335 IPR015421 -
Chmo13g01180 810 Pfam MOSC domain 663 805 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Chmo13g01180 810 SUPERFAMILY MOSC N-terminal domain-like 519 650 - -
Chmo13g01180 810 ProSiteProfiles MOSC domain profile. 645 808 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Chmo13g01180 810 Hamap Molybdenum cofactor sulfurase [MOCOS]. 15 807 IPR028886 GO:0006777(InterPro)|GO:0008265(InterPro)
Chmo13g01180 810 Pfam MOSC N-terminal beta barrel domain 519 636 IPR005303 -
Chmo13g01180 810 SUPERFAMILY PK beta-barrel domain-like 662 771 IPR011037 -
Chmo13g01180 810 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 3 486 - -
Chmo13g01180 810 SUPERFAMILY PLP-dependent transferases 28 483 IPR015424 -
Chmo13g01180 810 Pfam Aminotransferase class-V 232 475 IPR000192 -
Chmo13g01180 810 Pfam Aminotransferase class-V 38 172 IPR000192 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01180 K15631 molybdenum cofactor sulfurtransferase [EC:2.8.1.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
216528 Chmo13g01180 Chmo14g01081
226363 Chmo15g01028 Chmo13g01180
239103 Chmo13g01180 Chmo15g01028
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:61317376 Chmo14g01082 Chmo-Chr14:55840583 dispersed
Chmo Chmo-Chr13:61317376 Chmo14g01080 Chmo-Chr14:55834005 wgd
Chmo Chmo-Chr13:61317376 Chmo15g01027 Chmo-Chr15:59647673 wgd