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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01191 ATGGAGACATTTTCATCTCCTTCACATCAGACCCTAATTTCAGCCAATTTTTTTACTTCCAGATCTGCTTATTCTAATGGAATTTCATTACCATCACCGGTCAAGATTCACCGTCGTAGGTTTGCTGGAGTCAAAGCTTCTGTTGCCGTTGACCAAAATACTGAGAAAAAAGTTGCCTTGGTTAGAATTGGTACTCGAGGAAGTCCGTTAGCACTTGCGCAAGCTTATGAAACACGAAAGAAACTCATGGAAACTAGTAGCGAGTTGGCAGAAGAGGGGGCTATCGAGATTATAGTAATTAAAACAACGGGTGATAAAATATTGACTCAACCTCTTGCAGATATTGGTGGAAAAGGTTTGTTTACTAAAGAAATAGACGAGGCTCTTCTAAATAGTGATATCGACATTGCTGTCCATTCCATGAAAGATGTCCCAACTTATTTGCCTGACAAAACCATTTTACCTTGCAATCTTCCGCGTGAGGATGTTCGTGATGCATTCATTTGCTTGAGTGCAAGTTCTATAGCTGATCTTCCAGCTGGAAGCGTTGTTGGTACTGCGTCACTAAGAAGGAAGTCTCAACTACTTCACCGACATCCTCATCTCATTGTACAAGATAACTTTAGAGGCAACGTGCAGACAAGGTTGAAGAAACTAAAAGAAGGGAATGTCAATGCCACATTATTAGCTTTAGCCGGACTTAAGCGCTTAACTATGACTGAGCATGTGACTGCAATTCTTTCTATTGATGACATGCTTCCGGCTGTTGCACAAGGTGCAATTGGAATTGCTTGTCGAAGTGACGACGAGAAGATGGCTAATTACATAGCTAAACTAAACCACGAAGAAACACGATTGGCGGTTGCATGTGAGCGCGCTTTTCTATTGACACTTGATGGATCTTGTAGGACACCCATTGCCGGATATGCTACTAAAGATGAAGATGGTAATTGCCTCTTTAGAGGGTTAGTTGCCTCACCGGATGGAACTAAAGTACTGGAAACTACTAGAAGAGGATTGTATGTTTATGAAGATATGATGTTGATGGGGAAGGATGCTGGTGAGGAACTACTTAAGCGTGGTGGTCCTGGTTTCTTTAGCAGTTAG 1107 41.82 METFSSPSHQTLISANFFTSRSAYSNGISLPSPVKIHRRRFAGVKASVAVDQNTEKKVALVRIGTRGSPLALAQAYETRKKLMETSSELAEEGAIEIIVIKTTGDKILTQPLADIGGKGLFTKEIDEALLNSDIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFICLSASSIADLPAGSVVGTASLRRKSQLLHRHPHLIVQDNFRGNVQTRLKKLKEGNVNATLLALAGLKRLTMTEHVTAILSIDDMLPAVAQGAIGIACRSDDEKMANYIAKLNHEETRLAVACERAFLLTLDGSCRTPIAGYATKDEDGNCLFRGLVASPDGTKVLETTRRGLYVYEDMMLMGKDAGEELLKRGGPGFFSS 368
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01191 368 FunFam Porphobilinogen deaminase, chloroplastic 165 262 - -
Chmo13g01191 368 Gene3D - 281 367 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 FunFam Porphobilinogen deaminase 281 368 - -
Chmo13g01191 368 Hamap Porphobilinogen deaminase [hemC]. 60 360 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 ProSitePatterns Porphobilinogen deaminase cofactor-binding site. 291 307 IPR022419 GO:0004418(InterPro)|GO:0018160(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 Pfam Porphobilinogen deaminase, C-terminal domain 286 359 IPR022418 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 61 273 IPR022417 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 PIRSF PBGD 37 368 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 NCBIfam hydroxymethylbilane synthase 61 360 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 Coils Coil 72 92 - -
Chmo13g01191 368 CDD PBP2-PBGD-1 60 339 - -
Chmo13g01191 368 FunFam Porphobilinogen deaminase 61 164 - -
Chmo13g01191 368 Gene3D - 61 270 - -
Chmo13g01191 368 PRINTS Porphobilinogen deaminase signature 183 200 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 PRINTS Porphobilinogen deaminase signature 135 154 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 PRINTS Porphobilinogen deaminase signature 290 307 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 PRINTS Porphobilinogen deaminase signature 203 220 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 PRINTS Porphobilinogen deaminase signature 104 124 IPR000860 GO:0004418(InterPro)|GO:0033014(InterPro)
Chmo13g01191 368 PANTHER PORPHOBILINOGEN DEAMINASE 57 366 IPR000860 GO:0004418(PANTHER)|GO:0004418(InterPro)|GO:0005737(PANTHER)|GO:0006783(PANTHER)|GO:0033014(InterPro)
Chmo13g01191 368 SUPERFAMILY Periplasmic binding protein-like II 61 278 - -
Chmo13g01191 368 Gene3D - 162 262 - -
Chmo13g01191 368 SUPERFAMILY Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 280 367 IPR036803 GO:0004418(InterPro)|GO:0033014(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01191 K01749 hydroxymethylbilane synthase [EC:2.5.1.61]
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Event-related genes

Select Gene_1 Gene_2 Event_name
216532 Chmo13g01191 Chmo14g01091
226366 Chmo15g01043 Chmo13g01191
239106 Chmo13g01191 Chmo15g01043
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:62280836 Chmo15g04583 Chmo-Chr15:287963818 dispersed
Chmo Chmo-Chr13:62280836 Chmo14g01091 Chmo-Chr14:57202498 wgd
Chmo Chmo-Chr13:62280836 Chmo15g01043 Chmo-Chr15:60196272 wgd