AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01208 ATGGATTCCATGGTGTTTTGTTCAAAACCCATTTGGTTTCATTCCCCCAAAACCCTTTTTACAAGTAGTAGGTCTATATCAATGTTTGCCGCAAAAAAAACAAGAGTTGTTTCACATCTTGAGTCTAGAGTTAATGGCTCTCTTTCCTCATCTGACCCTGATTCTTTATTTCTTGACCGGCAAAAAGCATTGGAAGCTGCAATGAATGACATTAACAGCTCATTTGGGAAAGGGAGTGTGACGAGGCTTGGTAGTCTTGGTGGAGCTCTTGTTGAAACATTTCCAAGTGGTTGTCTTCCCTTAGACCTTGCGTTAGGAGGTGGCCTTCCTAAAGGAAGAATTGTAGAGATTTACGGACCTGAAAGTAGTGGAAAGACCACTTTGGCACTACATGCCATTGCAGAAGTGCAGAAACTAGGAGGCAATGCGATGCTTGTTGATGCAGAGCATGCTTTTGATCCATCATATTCTAAAGCATTAGGAGTGGATGTGGAAAATTTAATTGTTTGCCAACCAGACAATGGAGAGATGGCACTTGAGATTGCAGACCGTATGTGTAGATCTGGTGCGGTTGATCTCATTTGCATTGACTCTGTCTCTGCTCTTACTCCACGAGCTGAGATTGAAGGGGAAATTGGAATGCAGCAAATGGGCTTGCAAGCACGTCTTATGAGTCAAGCATTACGTAAGATGTCAGGAAATGCATCTAAAGCTGGATGTACACTTATCTTTCTTAACCAAATAAGATACAAGATTGGAGTTTATTATGGAAATCCAGAAGTTACAAGTGGAGGTATCGCCTTAAAGTTTTTTGCATCTGTTCGACTTGAAATACGGCCTATAGGGAAGATAAAGTCTGTCAAAGGTGATGAGGACATCGGGCTTAAGGTCCGCGTAAGAGTTCAAAAGAGTAAGGTCTCAAGACCATACAAGCAAGCGGAGTTTGAAATTATATTTGGAGAGGGAGCCAGCAAAATGGGATGTATACTGGACTGTGCGGAAATGATGGATATTGTTTTGAAAAAAGGCTCTTGGTATAGCTTCCGAGATCAAAGGTTGGGGCAAGGTAGAGACAGGGCGTTGCAGTACCTGCGAGAAAACCTTCCCCTTTGTGATGAAATAGAAAAGCTTGTGAGGTCAGCAATGGTAGATGGAACCGGGCAAGCAATTACGTCCTACGCTCGACAATCTACACCACTCATTGAAGAGGATGAATTACTAGAAGAACTACAGTGA 1236 42.56 MDSMVFCSKPIWFHSPKTLFTSSRSISMFAAKKTRVVSHLESRVNGSLSSSDPDSLFLDRQKALEAAMNDINSSFGKGSVTRLGSLGGALVETFPSGCLPLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRPIGKIKSVKGDEDIGLKVRVRVQKSKVSRPYKQAEFEIIFGEGASKMGCILDCAEMMDIVLKKGSWYSFRDQRLGQGRDRALQYLRENLPLCDEIEKLVRSAMVDGTGQAITSYARQSTPLIEEDELLEELQ 411
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01208 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 322 IPR027417 -
Chmo13g01208 411 ProSitePatterns recA signature. 267 275 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Chmo13g01208 411 SUPERFAMILY RecA protein, C-terminal domain 324 380 IPR023400 -
Chmo13g01208 411 Pfam recA bacterial DNA recombination protein 62 323 IPR049428 -
Chmo13g01208 411 CDD RecA 91 325 - -
Chmo13g01208 411 Hamap Protein RecA [recA]. 60 385 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 Pfam RecA C-terminal domain 327 382 IPR049261 -
Chmo13g01208 411 PANTHER RECA 43 389 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 SMART AAA-5 111 282 IPR003593 GO:0016887(InterPro)
Chmo13g01208 411 NCBIfam recombinase RecA 59 379 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 Gene3D - 89 385 IPR027417 -
Chmo13g01208 411 ProSiteProfiles RecA family profile 1. 90 248 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Chmo13g01208 411 FunFam DNA repair protein recA 1 like 89 384 - -
Chmo13g01208 411 PRINTS RecA protein signature 181 210 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 PRINTS RecA protein signature 219 248 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 PRINTS RecA protein signature 264 292 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 PRINTS RecA protein signature 147 176 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 PRINTS RecA protein signature 353 370 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Chmo13g01208 411 ProSiteProfiles RecA family profile 2. 253 328 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01208 K03553 recombination protein RecA
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Event-related genes

Select Gene_1 Gene_2 Event_name
216539 Chmo13g01208 Chmo14g01111
226372 Chmo15g01059 Chmo13g01208
239112 Chmo13g01208 Chmo15g01059
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:63637430 Chmo13g01249 Chmo-Chr13:65930103 dispersed
Chmo Chmo-Chr6:179741855 Chmo13g01208 Chmo-Chr13:63637430 transposed
Chmo Chmo-Chr13:63637430 Chmo14g01111 Chmo-Chr14:58719030 wgd
Chmo Chmo-Chr13:63637430 Chmo15g01059 Chmo-Chr15:61029105 wgd