AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01316 ATGTTACTTGGGCAATATAGTGATGAAGAAGTGGAGGAAGACTCGAGTAAAGACACAAACCATGATACTTGTGAGAGCTCTCCAGCTGTCCCTGTTGAGCAGGCAAAGATAGACAATTACGAGAGAACGAAAACTGATAGAGATGAAAACATTACTGCTGAAAAAGTTGATCAAGTGAAGGTTCACTCTTCTCCATTGAATGTCTTGCAGAAGTTGGAGGAAAATGGTGTTATAGAAGATAATAAAAGCGAGTCGCCACATAGGGATATGGATGCAGAGGATCAGGCTTCTGTTCCTTTCACAACTGATACACAGACATCGGGGGATGTAGATTCAGGCTGGAAAATGGTGTTGCATGAAGAGAGTAATTCATATTATTACTGGAACACTGTGACCGGTGAAACTTCTTGGGAAGTCCCTGTTGCTCTGACTCATGGAAGTGAATCAGCTTATGATCCTAAATCTGGCCCACAAGTTGAAGAATCACGTTTAACTTCTGTTGATAATGTTATGACTTACGAGGTTACGGAAACCAATGGTTCTAGGCCTGAGTTAGACATGTATAATGAAAAATATACGGATATCTTGGCAAATGGCGAGGGTAACCATGCTAACCCGATAGATGGGGGAAACTTGTCCTGTTCAAATGATGTAAATTATGGTTTTAGTAATGTGGAAGCCCACCATATGGATACTGGTATTCAGGATATGACTGGTTATGTATATCAAGGTACAGATGGTGATTCGTCTTCTGATTCATCCCGTCTTCTGCAACTTGGTGAAAATCTATCAGAAAGATTAAAATCTTTGAACCGGTTGGAAGCGTGCAATGACCAGTTAGCAAAGTTGGCGTTTGAACTTGATATAAGGCTTGCGGACATTAAGTCACTAGTACCTTACGGATCATCATTGCTTCCTTTTTGGTTGCATTCCGAAAATCAGCTGAAACTGCTGGAAGCTGCCATTAACAATGAAGTTCAAAAATGTTCTCAGTTTGCAAATACTGGCCAAACGAACCAGGCAGAAAACAGATCACTGGAAAACGTTTGTGGAACTGCAAATGAAAAGAATCCTCCTACTTCCATAAAACTTGATTATTCTGACCATTATGATATAAGTAAAGAAACAGATAAGGTTTTGAGTAATGCTACTGTTGCACTACCCAAGGATTCCACCAGTACTGTAGAAGCCCATGAAAATGTAGTTGAAGCAGAGGCTGTTCCCATTGTGGGCTCTCACTCTCTGGAAGATGTAGACATGGATGTGGAAATGGAAGTTGAAGATGAATCAAGTGTCCTTAGTGGGGCCCAACTAGATCAATCTATTCCTCCAATCCCCCATGGACAACCTGAATCTCATGGATCAGAAGACATTCCACCTCTGCCCAATGATGAGTGGATTCCGCCTCCACCGCCAGACGATGAATCAATGCCTCCACCACCACCAGAGGAGCCGCCTGAAGCTTCAATCCCTACACCTCCATCAGAGGTGCAGGCAGCACAGCCTTACTCTTATGGACAACAATATAGTTTTTCATACCCTGGGTCCGGTTATGAGTATTACGGTCAAACAAACAACTTGACAACAGGAGTAGCAAGTAATGGTTATTATGTGGATGCTAACGGATGTCAAGTAGCTGCTCCCGTACAAACCCTTTATTACCCAGCAGTGCCCAACCCATATCCAGATGCCACTGGAGAGCCTGTGACGTACTACACCCTACAAGAAGGGTCCATGCAGACCGCACCAGTTATAGGCACCGTAGAAACTTCTGGTTTACAGAAACCTGTTCAGGCAAATATTGCTTTTGATCAAACTGAATCATCTACAGAGGTTCCTGCTAGTTCTGTCTCTGCGCATGCTTTAGGAACTTCTACTGTTACAAGTAGTGTTTCTATGGTGTCTGCTCCTGCTGTTGCAACTACGGTTGCTCCAACAGAATCAGCTCCTAAGGTTCAACCTAAAGTTACACGTAATAAAAAACGAACAGTGGCTGCTGTGACCTCATTAAGGTCTAACAAGAAAGTTTCTGGATTGGTTGATAAGTGGAAGGCTGTGAAAGAGGAAATGCATGAAGACGAGGAAGACGAACCTGAAGATGCTCTACAGGCGTTAGAGAAAAAACGGCAGCGCGAGATTGAGCAATGGCGTGCCCAGCAGATTGCAAGTGGGGAAGCTAAAGACAATGCCAACTTTCAGCCTCTTGGTGGTGATTGGCGGGAGAGAATTAGGCGGAAGAGAGCCAAAAAATCAGTAGAAACCGTAGAAAGTGTAGCTAAGGCCAATGATGACACGAACCAACAGCCAGATTTTGTTGAACTTACAAAACAGCTGCCATCGGGTTGGCAGGCTTATTGGGATGAAGCGTCAAAGGAGGTTTATTATGGGAACACAAAAACATCAGAGACTACGTGGATTAAACCTACAAATTAA 2433 43.32 MLLGQYSDEEVEEDSSKDTNHDTCESSPAVPVEQAKIDNYERTKTDRDENITAEKVDQVKVHSSPLNVLQKLEENGVIEDNKSESPHRDMDAEDQASVPFTTDTQTSGDVDSGWKMVLHEESNSYYYWNTVTGETSWEVPVALTHGSESAYDPKSGPQVEESRLTSVDNVMTYEVTETNGSRPELDMYNEKYTDILANGEGNHANPIDGGNLSCSNDVNYGFSNVEAHHMDTGIQDMTGYVYQGTDGDSSSDSSRLLQLGENLSERLKSLNRLEACNDQLAKLAFELDIRLADIKSLVPYGSSLLPFWLHSENQLKLLEAAINNEVQKCSQFANTGQTNQAENRSLENVCGTANEKNPPTSIKLDYSDHYDISKETDKVLSNATVALPKDSTSTVEAHENVVEAEAVPIVGSHSLEDVDMDVEMEVEDESSVLSGAQLDQSIPPIPHGQPESHGSEDIPPLPNDEWIPPPPPDDESMPPPPPEEPPEASIPTPPSEVQAAQPYSYGQQYSFSYPGSGYEYYGQTNNLTTGVASNGYYVDANGCQVAAPVQTLYYPAVPNPYPDATGEPVTYYTLQEGSMQTAPVIGTVETSGLQKPVQANIAFDQTESSTEVPASSVSAHALGTSTVTSSVSMVSAPAVATTVAPTESAPKVQPKVTRNKKRTVAAVTSLRSNKKVSGLVDKWKAVKEEMHEDEEDEPEDALQALEKKRQREIEQWRAQQIASGEAKDNANFQPLGGDWRERIRRKRAKKSVETVESVAKANDDTNQQPDFVELTKQLPSGWQAYWDEASKEVYYGNTKTSETTWIKPTN 810
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01316 810 CDD WW 779 809 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 MobiDBLite consensus disorder prediction 1 53 - -
Chmo13g01316 810 Gene3D - 773 810 - -
Chmo13g01316 810 PANTHER OS06G0298400 PROTEIN 1 810 - -
Chmo13g01316 810 MobiDBLite consensus disorder prediction 425 498 - -
Chmo13g01316 810 SUPERFAMILY WW domain 773 809 IPR036020 GO:0005515(InterPro)
Chmo13g01316 810 MobiDBLite consensus disorder prediction 75 94 - -
Chmo13g01316 810 ProSitePatterns WW-rsp5-WWP domain signature. 782 808 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 SUPERFAMILY WW domain 100 142 IPR036020 GO:0005515(InterPro)
Chmo13g01316 810 MobiDBLite consensus disorder prediction 462 492 - -
Chmo13g01316 810 ProSiteProfiles WW-rsp5-WWP domain profile. 108 142 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 MobiDBLite consensus disorder prediction 73 94 - -
Chmo13g01316 810 CDD WW 112 141 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 MobiDBLite consensus disorder prediction 37 53 - -
Chmo13g01316 810 Pfam WW domain 778 808 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 Pfam WW domain 112 140 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 Gene3D - 106 153 - -
Chmo13g01316 810 SMART ww-5 777 810 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 SMART ww-5 109 142 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 ProSiteProfiles WW-rsp5-WWP domain profile. 776 810 IPR001202 GO:0005515(InterPro)
Chmo13g01316 810 ProSitePatterns WW-rsp5-WWP domain signature. 114 140 IPR001202 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01316 K24774 formin-binding protein 4
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Event-related genes

Select Gene_1 Gene_2 Event_name
226395 Chmo15g01142 Chmo13g01316
239135 Chmo13g01316 Chmo15g01142
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:68108818 Chmo14g01211 Chmo-Chr14:63796566 wgd
Chmo Chmo-Chr13:68108818 Chmo15g01142 Chmo-Chr15:64977492 wgd