AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01349 ATGTCAAAGAGGCAAAAAACAACTGTCCGCCGAACACAATCCAACAACAAGATCATCCACAAGTATGGGGCCGACAGCATGACATCAAATATTCAATGTACGATGAATATACAAGATTCTGTTGCAGCTGTAGAATCTATTTTAAGGTACAGGTTTTTGGACAAAAGTTTGTTAGAAGAAGCTTTGACACATTCTTCATACACGGAGAGTCAGTCATATCAAAGATTGGAGTTTCTTGGTGATGCTGCTCTTGGGAATGCCATATCGAGTTTTGTTTATTTGGCTTACCCTGATCTTGACCCTGGCCAATTGTCGCTTCTTCGTGCTGCGAATATTAGTACCGAGAAACTCGCGAGAGTGGCTGTGCAACATGGGCTGTATAAGTATGTGAGGCATAATGCAGCAGATATGCTTAGTGATAAGGTTAGAGAATTTGTGGATGTTGTTGAGGGAGAACAAGAGATAGTTGTGCACGGTGGACAAATAAAAGCCCCAAAAGTTTTAGCAGATATCGTAGAATCAGTGGCTGCAGCTGTTTATGTTGATTGTGGGTTCAATTTGCAAAGCATGTGGCTGGTAATCAGAGAGTTACTTGAACCAATAGTAATGCTAAACGTCCTCGAGAAAAAACCGCAGCCTATTACAATGCTGTTTGAGTTATGTCAGAAAGATGGGAAGCATCTTGAAATAAAGCATTGCAGGAAAGTGATTAAATCTCTAGGTGATAGAAACATTGCAAGCGTTTTTGTGGATGGGATATTTATTGCCTCTGGCTCTTCAGAGACCAAAGAGAATGCAAAGCTTCATGCAGCCGAAGCCGCTTTGTCTAAGTTAACAAGGTCCAATAACATCAGCGCAATAGTCCCCTATGTAATTGGTGGTTTAAATGAAGCAACTGAAATTGAAGGTGCCAAACAGAAATTACACGAGCTTTGCAACAAGAAACGATGGCCAAAAGCCACTTACAAAATTAAGAATGAGCTGGGACCCGCCCACGATAGAAGATACGCATCATCAGTTGAAATTGATGTTTCCAATAGGGTTTTTATAGTGACGGGAGAAATGAGGTCTAGAGTAAAGGATGCTGAGAATTCTGCAGCCTCGGTGATGTTCTGTGCTTTGCAAAAATATGGATTGATATGA 1143 41.03 MSKRQKTTVRRTQSNNKIIHKYGADSMTSNIQCTMNIQDSVAAVESILRYRFLDKSLLEEALTHSSYTESQSYQRLEFLGDAALGNAISSFVYLAYPDLDPGQLSLLRAANISTEKLARVAVQHGLYKYVRHNAADMLSDKVREFVDVVEGEQEIVVHGGQIKAPKVLADIVESVAAAVYVDCGFNLQSMWLVIRELLEPIVMLNVLEKKPQPITMLFELCQKDGKHLEIKHCRKVIKSLGDRNIASVFVDGIFIASGSSETKENAKLHAAEAALSKLTRSNNISAIVPYVIGGLNEATEIEGAKQKLHELCNKKRWPKATYKIKNELGPAHDRRYASSVEIDVSNRVFIVTGEMRSRVKDAENSAASVMFCALQKYGLI 380
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01349 380 SMART DRBM-3 304 375 IPR014720 -
Chmo13g01349 380 SMART DRBM-3 213 279 IPR014720 -
Chmo13g01349 380 Pfam Double-stranded RNA binding motif 213 278 IPR014720 -
Chmo13g01349 380 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 303 376 IPR014720 -
Chmo13g01349 380 SMART riboneu5 56 207 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chmo13g01349 380 CDD RIBOc 56 202 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chmo13g01349 380 Gene3D Ribonuclease III domain 29 205 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Chmo13g01349 380 Gene3D - 301 376 - -
Chmo13g01349 380 Gene3D - 208 286 - -
Chmo13g01349 380 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 212 280 IPR014720 -
Chmo13g01349 380 ProSiteProfiles Ribonuclease III family domain profile. 41 184 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chmo13g01349 380 Pfam Ribonuclease III domain 74 184 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chmo13g01349 380 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 303 375 - -
Chmo13g01349 380 FunFam Endoribonuclease dicer-like 1 35 205 - -
Chmo13g01349 380 SUPERFAMILY RNase III domain-like 39 201 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Chmo13g01349 380 SUPERFAMILY dsRNA-binding domain-like 303 378 - -
Chmo13g01349 380 ProSitePatterns Ribonuclease III family signature. 74 82 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Chmo13g01349 380 PANTHER DICER-RELATED 36 352 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Chmo13g01349 380 SUPERFAMILY dsRNA-binding domain-like 166 281 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01349 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
226415 Chmo15g01170 Chmo13g01349
239155 Chmo13g01349 Chmo15g01170
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:69788215 Chmo20g02218 Chmo-Chr20:126282066 dispersed
Chmo Chmo-Chr13:69788215 Chmo15g01170 Chmo-Chr15:66784468 wgd