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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo13g01376 ATGGGCTTTTCATCATCATCATCATCATCAGCTGCTACTACTTGTTCAATGAAAATGGGTTTTGATCTTTATAATAATAACTTTCCATCCAACTCCTACTCACATTTTCATGGGGTTTTCAAGATTGTTTCTTTCAATGAAGTTAACCAAAAACCCATTAGTTTTCATATACCAAAACCCCACAGAAATAGACATTTCATTAAGGCTTCTTCATCTTCCAAGATTCAAGAAACAGCAGGAGAAGAAGCTATTCAATTTGATGAAAGAACTAGCCCTAGTGAGGTGAAAAAGGAGATAGAAATGTGCTATGACCTAATATGCAGACTTGGGAGGGGAGTCGTGTACTTGGGTTCTGCAAGGATGGGTCCGGGACACGAGCATTATATCCAGACGCAACAATTGGCAAGAGAGGTGGCAAACCTCTTGGGTAGTACGTCATGGTCAGGTGCAGGACCAGGGCTCATGGATGCTGCCACCCAAGGTGCTCTTCAAGCGGGAAAACCAGTTGGTGGATTTAAAATTGGCAAAGAAGCTAACGAATGGACTTCAACCAATTATCATCCGTATCTTCCTTCTCATACTTACCTTACATGCAGGTTTTTTTCTGCAAGAAAGCATGGATTAGTTGATGCTGCGGTTAGAACTAGTAAGCAGGACAGAACAGCTGTCATAGTTCTTCCAGGAGGGATTGGGACATTAGATGAGGCTTTCGAGATTCTTGCATTGATACAGTTGGAGAGAATAGGTTCAGCACTCCCTGTACCATTTCTCTTAATGAATTACGACTCTTTCTATTCAAAGCTTTTAGACTTTCTGGATGTATGTGAGGATTGGGGGACAGTCTCCAAAGGAGAGGTTTCATCGCTTTGGAAAGTATGCAATAGAAACTCGGAAGCCTTGGCTTATCTCAAAGATTTTTACGATATTCATCCTGTCGATCTAGCATAA 948 41.35 MGFSSSSSSSAATTCSMKMGFDLYNNNFPSNSYSHFHGVFKIVSFNEVNQKPISFHIPKPHRNRHFIKASSSSKIQETAGEEAIQFDERTSPSEVKKEIEMCYDLICRLGRGVVYLGSARMGPGHEHYIQTQQLAREVANLLGSTSWSGAGPGLMDAATQGALQAGKPVGGFKIGKEANEWTSTNYHPYLPSHTYLTCRFFSARKHGLVDAAVRTSKQDRTAVIVLPGGIGTLDEAFEILALIQLERIGSALPVPFLLMNYDSFYSKLLDFLDVCEDWGTVSKGEVSSLWKVCNRNSEALAYLKDFYDIHPVDLA 315
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo13g01376 315 Pfam Possible lysine decarboxylase 155 302 IPR031100 -
Chmo13g01376 315 PANTHER EXPRESSED PROTEIN 83 304 - -
Chmo13g01376 315 SUPERFAMILY MCP-YpsA-like 102 304 - -
Chmo13g01376 315 Gene3D - 91 311 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo13g01376 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
216579 Chmo13g01376 Chmo14g01229
226432 Chmo15g01207 Chmo13g01376
239172 Chmo13g01376 Chmo15g01207
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:71675917 Chmo14g01229 Chmo-Chr14:64511764 wgd
Chmo Chmo-Chr13:71675917 Chmo15g01207 Chmo-Chr15:70231713 wgd