AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00187 ATGGCTCGGTGGATGGTTGGTCATGTTACATTGCTTGTGGTGTTGATTATGGTGGCATTTGGCGATGCAGCGACTCCACCTGGAATTGCTAAAAACCCTAGCCAAGCAACCTGTAAAGACCCGGCATATAAAGAATGTCATAACTTGGTTCATGTTTGTCCTAAGTTTTGTCCCAATGGTTGCACTGTTCATTGTCAATCGTGCAAACCTATTTGTATCAACTCCACTACCCCATCAGCACCGGTGTTAGCACCTCCACCACATGTATACTCGCCACCTCCAACTTCACCTCCAACATACGCTACTCCACCTACTCAATCGCCACCAAAATCATCACCTCCTCCTCCTACTCCTACTCCACCTTCTCCACCAACGAAATCCAAGTGCAAACTCCGAAGCTACCCACAATGTTATGCCACCGAACATGTTTGTCCAGCTTCTTGTCCCAATCAATGCGAAGTTGATTGTGTTTCCTGCAAGCCCATTTGCACTTGTGATATGCCAGGAGCAGTGTGCCAAGATCCTCGTTTTATTGGTGCTGATGGCATCACTTTCTATTTCCATGGAAAGAAAGATAACGATTTTTGCCTTGTTGCGGATAACCACCTCCACATCAATGGTCATTTCATTGGCAAGAGGAACAAAAACATGGGCAGAGACTTTACTTGGGTTCAATCCATTGGAGTATTGTTTGCCAATCACAAACTACAAATCAGTGCTCAAAAGACTGCCTCTTGGGATGATGCCATTGACCGTATCTCCATTACATTTGATGGGGAAACCATCCTTCTCCCAGAAACCGAAGGTGCCAAATGGCAATTATCCACAACCTCAATCACTAGGATTCAAGACACAAATAATGTCGTAGTCGAAGTTGATAACCTCTTTAAGATCACAGCCAAAGTGGTCCCGATAACAGAAGAAGACTCAAGAATCCATAACTATGGTGTAACTGATGATGATTGCCTTGCTCATCTTGATCTCAAGTTCAAGTTCTACTCCTTGAGTAACGAAGTGGACGGAGTTTTGGGACAGACTTACAAGAGCGACTATGTGAGCAATGTGAAAATGGGAGTGTTAATGCCTGTGATGGGAGGAGAAAAGAAGTTCAAGAGTGGAGAACTATTTGCTACTGATTGCTCTGTGGCTAAGTTCACGGGCAACCATGAGGACGATTCCTCTTTGAATTTGGAATTGCCAAGCTTGAAGTGCCAAAGTGGTTTGGATGGACGAGCTTGTGATATGCCAGGAGCAGTGTGTCAAGATCCTCGTTTTATTGGAGCTGACGGGATCACTTTCTACTTCCATGGAAAGAAGGATAAAGATTTCTGCCTTGTTGCCGACAACAACCTCCACATCGATGGTCACTTCATTGGCAAAAGAAACAAAAACATGGTCTCAGAAATCACCGCCGCTGCTGCCGCCATGTCGCTGCTGTTGCCGTCTGCCGTGACAACCGCAACAGCACCACCTCCTTCCTGTCTTCTCTTCTTCTTCTCTTCTTCTCTTTCAGCAATAAACCAACGAATGGCGTGTGTTGCTCCTGGCTACTACGGAAGGGATGCAGGCGGTGATCCACCCGAGGATCGACAGCCTAAGCGTTTACCTATATTGTGGATGATTATATACACCCAGAATGTAGGTAGTGATTTAACAATGAAAGGATATCCTTCTTGGCTTGCTAAGGGAGAAATGACAACTATTCAAGATGCGGTCAAGGAAAAAAAGATGTTACCCAAAACAGACCGCGAGATCATCGATGAAGTCCTGGATTCTCAAAATCGGGGACATATTGCGGGTGTGGGCAGGGTGGTACCAGGCACGGGCTCGAGTTCTAGGAGCACACAAGTCGACACAGGTTTTATTACCCGGGAGGAGGTTGAAGAGATGAAGAAAAAGCATGCTATGGAGCTGCAGGAGCAAAGAAACTTGTTGAAGCAATTTCTGGATTTTTACAACCGTCAACAAGGTACACCCGCTTCACAGTTTCAAACCGATAAGTGTTACAAGCCGATAAGTGTTGATGAAGATGATGATGGTGTTGATGTGGTTGCTGTTGTAAGACTTTACATGGGTCCAATCTATTGGGGTTCTCTTTGCGAATCACAAACTACAAATCAATGCTCAAAAGACTACCACTTTTGGGATGATACCATTGACCGTATCTCTATTCCATATGACGGGGAAAGCATCTTCCTCCCAGAAACCAAAGGTGCCAAATGGCAATCTTCCACAACCTCAATTACTAGGACTCAGGATACATATGATGTCGTTCTTGAAGTTGATAACCTCTTCAAAATCACGGTCAAAGTGGTTCCAATAACAAAAGAAGAGTCAAGAATTCATGACTATGGTATTACACTATTACCGATGATGATTGCTTTGCTCATCTATTTGCCACTGATTGCTCTGTGGCTAAGTTTACGGGCAACCAAGAACATGGTTCCTCTCTAA 2454 44.66 MARWMVGHVTLLVVLIMVAFGDAATPPGIAKNPSQATCKDPAYKECHNLVHVCPKFCPNGCTVHCQSCKPICINSTTPSAPVLAPPPHVYSPPPTSPPTYATPPTQSPPKSSPPPPTPTPPSPPTKSKCKLRSYPQCYATEHVCPASCPNQCEVDCVSCKPICTCDMPGAVCQDPRFIGADGITFYFHGKKDNDFCLVADNHLHINGHFIGKRNKNMGRDFTWVQSIGVLFANHKLQISAQKTASWDDAIDRISITFDGETILLPETEGAKWQLSTTSITRIQDTNNVVVEVDNLFKITAKVVPITEEDSRIHNYGVTDDDCLAHLDLKFKFYSLSNEVDGVLGQTYKSDYVSNVKMGVLMPVMGGEKKFKSGELFATDCSVAKFTGNHEDDSSLNLELPSLKCQSGLDGRACDMPGAVCQDPRFIGADGITFYFHGKKDKDFCLVADNNLHIDGHFIGKRNKNMVSEITAAAAAMSLLLPSAVTTATAPPPSCLLFFFSSSLSAINQRMACVAPGYYGRDAGGDPPEDRQPKRLPILWMIIYTQNVGSDLTMKGYPSWLAKGEMTTIQDAVKEKKMLPKTDREIIDEVLDSQNRGHIAGVGRVVPGTGSSSRSTQVDTGFITREEVEEMKKKHAMELQEQRNLLKQFLDFYNRQQGTPASQFQTDKCYKPISVDEDDDGVDVVAVVRLYMGPIYWGSLCESQTTNQCSKDYHFWDDTIDRISIPYDGESIFLPETKGAKWQSSTTSITRTQDTYDVVLEVDNLFKITVKVVPITKEESRIHDYGITLLPMMIALLIYLPLIALWLSLRATKNMVPL 817
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00187 817 Coils Coil 624 644 - -
Chmo14g00187 817 MobiDBLite consensus disorder prediction 93 125 - -
Chmo14g00187 817 MobiDBLite consensus disorder prediction 93 127 - -
Chmo14g00187 817 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 713 787 - -
Chmo14g00187 817 Pfam Root cap 329 385 IPR009646 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00187 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:7862836 Chmo15g00150 Chmo-Chr15:9074469 dispersed
Chmo Chmo-Chr14:7841585 Chmo14g00187 Chmo-Chr14:7862836 tandem