AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo14g00225 | ATGGCATCTTCTTATTCAGTATTATTATTACCTCCTCAGTTACGATCTTCTTCTTCTTCTTCGTTGTTTTTTGCAAACACTAGTAATTATCTCAAGATCAATAATTATTCATCGATTAAACACCGATCTGATCTACGTGTCTTCTCTATGCGTCGACCCTTAAAAGCAACAGTAGTGACCGAACAGTCGTGGAACACATCAGTGCTTGACAGCAAAACACCGGTACTAGTTGAGTTCTACGCCAGTTGGTGCGGACCATGCCAGATGGTCCACCGAGTGATTGATGAGATTGCAGGCGAGTATGCTGGTAAGGTCAAGTGTTTCGTGCTGAATGCTGACCAAGACCCACTGATCGCTGAAGAATATGACATCAAGGCTGTACCCATTGTGCTGTTATTCAAGAACGGTCAGAAATGTGAGTCGGTGGTCGGGACCATGCCTAAAGAATTCTACGTGGCTGCTATTGAAAGGGTCTTGTCATCTTCATCTTGA | 492 | 43.7 | MASSYSVLLLPPQLRSSSSSSLFFANTSNYLKINNYSSIKHRSDLRVFSMRRPLKATVVTEQSWNTSVLDSKTPVLVEFYASWCGPCQMVHRVIDEIAGEYAGKVKCFVLNADQDPLIAEEYDIKAVPIVLLFKNGQKCESVVGTMPKEFYVAAIERVLSSSS | 163 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo14g00225 | 163 | Gene3D | Glutaredoxin | 56 | 162 | - | - | |
| Chmo14g00225 | 163 | ProSiteProfiles | Thioredoxin domain profile. | 50 | 160 | IPR013766 | - | |
| Chmo14g00225 | 163 | FunFam | Thioredoxin | 51 | 162 | - | - | |
| Chmo14g00225 | 163 | Pfam | Thioredoxin | 57 | 155 | IPR013766 | - | |
| Chmo14g00225 | 163 | PANTHER | GEO12009P1 | 44 | 159 | - | GO:0005737(PANTHER)|GO:0015035(PANTHER) | |
| Chmo14g00225 | 163 | PRINTS | Thioredoxin family signature | 123 | 134 | - | - | |
| Chmo14g00225 | 163 | PRINTS | Thioredoxin family signature | 75 | 83 | - | - | |
| Chmo14g00225 | 163 | PRINTS | Thioredoxin family signature | 83 | 92 | - | - | |
| Chmo14g00225 | 163 | SUPERFAMILY | Thioredoxin-like | 53 | 160 | IPR036249 | - | |
| Chmo14g00225 | 163 | CDD | TRX-family | 67 | 156 | - | - | |
| Chmo14g00225 | 163 | ProSitePatterns | Thioredoxin family active site. | 76 | 94 | IPR017937 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo14g00225 | K03671 | thioredoxin |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 47958 | Chmo14g00225 | Chmo1g02413 | |
| 47959 | Chmo14g00225 | Chmo2g02178 | |
| 47960 | Chmo14g00225 | Chmo3g02189 | |
| 232189 | Chmo13g00158 | Chmo14g00225 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr14:9501818 | Chmo15g00783 | Chmo-Chr15:44792169 | dispersed | |
| Chmo | Chmo-Chr1:122961669 | Chmo14g00225 | Chmo-Chr14:9501818 | wgd | |
| Chmo | Chmo-Chr13:6232820 | Chmo14g00225 | Chmo-Chr14:9501818 | wgd | |
| Chmo | Chmo-Chr14:9501818 | Chmo15g00188 | Chmo-Chr15:10497369 | wgd | |
| Chmo | Chmo-Chr14:9501818 | Chmo2g02178 | Chmo-Chr2:108016457 | wgd | |
| Chmo | Chmo-Chr14:9501818 | Chmo3g02189 | Chmo-Chr3:104971337 | wgd |