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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00236 ATGCTACCTCGTCATGACAGCATTTGTCGTCTGTTCCTGTGTTATATTGCAATGGCTGACAAAAAACACACACAACACATTTTATCAAAACAAAAATCATGGTCACCCGACATAAACCGCGACTTAGAGTGGCAGAAACTCAAGACGAAACAACGACATCGTTTCAACCAGCTTTGTCGTAGCAAGAGTACTGTTGATGATCATGGTGGTGACGTCACTGATGATGATGTTAAGGAGTTGAAAGCTTGTTTTGATTTAGGGTTTGGTTTTGATAAGCTGGATGATATGGACCCGAAACTTACGCATGCTTTTCCTGCGCTCGAGCTGTATGCTGCGGTTAAACGAGGGTATAATGGTGGTGGAATGTTGTCAAGGTCTTCGTCGTCGATTAGTACTGATTCGTGTTCGAGTTCTTCTTCAAGCGTTGCTACTACGTCTATTGTTGATCCAAGTAAACCATTTTTCTGTCTTCTATCTTTAATAAGGAAAAATCACTGA 498 41.37 MLPRHDSICRLFLCYIAMADKKHTQHILSKQKSWSPDINRDLEWQKLKTKQRHRFNQLCRSKSTVDDHGGDVTDDDVKELKACFDLGFGFDKLDDMDPKLTHAFPALELYAAVKRGYNGGGMLSRSSSSISTDSCSSSSSSVATTSIVDPSKPFFCLLSLIRKNH 165
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00236 165 Pfam Protein of unknown function (DUF1685) 72 129 IPR012881 -
Chmo14g00236 165 PANTHER OSJNBA0071G03.3 PROTEIN 25 148 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00236 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
232192 Chmo13g00161 Chmo14g00236
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:10105190 Chmo14g05017 Chmo-Chr14:304340603 dispersed
Chmo Chmo-Chr13:6297240 Chmo14g00236 Chmo-Chr14:10105190 wgd
Chmo Chmo-Chr14:10105190 Chmo15g00198 Chmo-Chr15:11257805 wgd