AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00404 ATGGCGGCTGCATCTTCCCACCTTCATCTCCAAACACCCCTCTTCAAAACCCTACCCAAAACCCCACTCCCAAACACCCCACAAAGAAAACCCTTCTTCAAACCCACTCCAACCAAACCCTTTGCCATCAAAGCAGTCATCTCCCAAACACCCCCCCAAACCCAAAAATTCACCCACTGTTTCACCAAACAAGAAGATGGGTACTTGTATGTTGAGAAAACCAAAGTTGAGGAAATAATGCAAGTGGTGGAAAAAAGACCTTTTTATTTATATAGCAAGGCTCAGATTACAAGAAATGTGGAGGCTTATAAAGAGGCTTTGGAGGGTTTGGATGGAATTAGTGTTATTGGTTATGCTGTAAAAGCTAATAATAATTTCTTGATTTTGAACCATTTGAGGAGTTTGGGTTGTGGGGCTGTTTTGGTTAGTGGCAATGAGTTGAGGTTGGCTTTGAAAGCTGGTTTTGATCCTACAAGGTGTATTTTTAATGGAAATGGGAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTCTTTGTTAACATAGACAGTGAATTTGATTTGGATAATATTGTAGCGGCTGCAAGAATTGCTGGAAAGCAAGTCAATGTATTGCTCCGAATCAATCCTGATGTTGACCCTCAGGTCCATCCTTATGTTGCCACCGGGAACAAGAACTCCAAGTTTGGTATAAGAAATGAGAAATTGCAATGGTTTTTGGATCAAGTGAAGTCGTATCCAGATGAACTTAAGCTAGTTGGTGCTCATTGCCATCTTGGATCCACCATTACCAAGGTTGACATATTTAGAGACGCTGCAGAGATTATGGTGAAGTTCATTGACGAAATTCGAGCCCAAGGGTTTGATATTAGTTATTTGAACATTGGAGGTGGTCTTGGGATTGATTATTATCATACTGGTACCGTTCTTCCAACTCCAAGAGACCTCATCGACACGGTGCGGGATCTAGTCAAGTCGCGAAACCTTAATCTGATTATTGAACCCGGGAGGTCACTTATTGCGAATACTTGCTGCCTTGTTAACCGCGTTACTGGTGTCAAAACAAATGGCACGAAAAACTTTATTGTGATTGATGGCAGCATGGCTGAACTTATCCGTCCTAGTTTGTACGATGCTTATCAACACATAGAGCTAGTTTCTCCTCCACCACCTGATGCTGCTGTTTCGACTTTTGACGTTGTGGGCCCGGTTTGCGAGTCTGCCGATTTCTTGGGAAAGAATAGGGAACTTCCTGCTCCAGCCAGGGGTTCTGGGCTTGTTGTTCATGATGCGGGTGCCTACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGTCCACCAGAGTATTGGGTTGAAGAAGATGGATCAGTTTCCAAAATCAGGCACGGGGAGACTTTTGACGATCATATGAGATACTTCGAGGGACTCTAG 1443 43.52 MAAASSHLHLQTPLFKTLPKTPLPNTPQRKPFFKPTPTKPFAIKAVISQTPPQTQKFTHCFTKQEDGYLYVEKTKVEEIMQVVEKRPFYLYSKAQITRNVEAYKEALEGLDGISVIGYAVKANNNFLILNHLRSLGCGAVLVSGNELRLALKAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVAAARIAGKQVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKSYPDELKLVGAHCHLGSTITKVDIFRDAAEIMVKFIDEIRAQGFDISYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRDLVKSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPPDAAVSTFDVVGPVCESADFLGKNRELPAPARGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFDDHMRYFEGL 480
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00404 480 CDD PLPDE-III-DapDC 87 455 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Chmo14g00404 480 Gene3D Alanine racemase 93 340 IPR029066 -
Chmo14g00404 480 FunFam Diaminopimelate decarboxylase 93 340 - -
Chmo14g00404 480 SUPERFAMILY Alanine racemase C-terminal domain-like 320 475 IPR009006 GO:0003824(InterPro)
Chmo14g00404 480 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 287 302 IPR022657 -
Chmo14g00404 480 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 344 434 IPR022643 GO:0003824(InterPro)
Chmo14g00404 480 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 118 136 IPR022653 -
Chmo14g00404 480 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 94 343 IPR022644 GO:0003824(InterPro)
Chmo14g00404 480 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 86 474 IPR009006 GO:0003824(InterPro)
Chmo14g00404 480 PRINTS Diaminopimelate decarboxylase signature 136 153 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Chmo14g00404 480 PRINTS Diaminopimelate decarboxylase signature 361 379 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Chmo14g00404 480 PRINTS Diaminopimelate decarboxylase signature 444 466 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Chmo14g00404 480 PRINTS Diaminopimelate decarboxylase signature 224 233 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Chmo14g00404 480 NCBIfam diaminopimelate decarboxylase 62 475 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Chmo14g00404 480 FunFam Diaminopimelate decarboxylase 322 474 - -
Chmo14g00404 480 SUPERFAMILY PLP-binding barrel 86 344 IPR029066 -
Chmo14g00404 480 Hamap Diaminopimelate decarboxylase [lysA]. 76 478 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Chmo14g00404 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 138 150 IPR000183 GO:0003824(InterPro)
Chmo14g00404 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 434 447 IPR000183 GO:0003824(InterPro)
Chmo14g00404 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 118 136 IPR000183 GO:0003824(InterPro)
Chmo14g00404 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 251 264 IPR000183 GO:0003824(InterPro)
Chmo14g00404 480 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 333 352 IPR000183 GO:0003824(InterPro)
Chmo14g00404 480 PANTHER DIAMINOPIMELATE DECARBOXYLASE 53 476 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00404 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Event-related genes

Select Gene_1 Gene_2 Event_name
213555 Chmo14g00404 Chmo15g00286
225839 Chmo13g00441 Chmo14g00404
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:131693890 Chmo14g00404 Chmo-Chr14:16754587 transposed
Chmo Chmo-Chr13:19824361 Chmo14g00404 Chmo-Chr14:16754587 wgd
Chmo Chmo-Chr14:16754587 Chmo15g00286 Chmo-Chr15:15108675 wgd