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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00413 ATGGCATATCAAGTGTTGGAGCGTAGCCAACCAGCTGATCTCTCAAAGCACCCATCGGGAATTGTTCCCACTCTTCAGAATATTGTGTCTACTGTCGATCTTGATTGCAAGCTAGACCTGAACGCGATTGCACAGAAAGCTCGTAATGCAGAATACAACCCCAAGCGTTTTGCTGCTGTTATCATGAGGATACGAGAACCAAAAACAACAGCTTTAATATTTTCTTCCGGGAGAATGGTATGTACAGGAGCTAAGAGTGAGCAGGAGTCAAAAATGGCAGCACGGAAGTATGCTCGGATCATTCAGAAACTCGGATTTCCAGCCAAATTTAAGGATTTCAAGATTCAAAATATCGTTGGCTCATGTGATGTAAAATTTCCCATTAAGCTTGAAGAGCTTGATGAGTCCTCTCACAGTGCCTTTACAAGTTATGAACCAGAACTGTTTCCGGGACTGATATATCGAATGAAACAACCGAAAATCGTTCTGCTTATTTTTTTATCTGGAAAGATTGTTCTCACGGGAGCCAAGATTCTTGATATCGATGAAATGGTTTTGTATCAGGCGAAAGTTGACTTTAGGATTGGACTTGGTTGTGAAGGGCGAAAGTGTAAATATCTTCGTGGAAATAGAATAGAGGAAGTGAAGGCTAATGCCACTACTTTCCGTTTTTTGTAA 678 41.15 MAYQVLERSQPADLSKHPSGIVPTLQNIVSTVDLDCKLDLNAIAQKARNAEYNPKRFAAVIMRIREPKTTALIFSSGRMVCTGAKSEQESKMAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIKLEELDESSHSAFTSYEPELFPGLIYRMKQPKIVLLIFLSGKIVLTGAKILDIDEMVLYQAKVDFRIGLGCEGRKCKYLRGNRIEEVKANATTFRFL 225
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00413 225 CDD TBP-eukaryotes 22 177 IPR033710 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 Hamap TATA-box-binding protein [tbp]. 19 199 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 FunFam TATA-box-binding protein 2 30 115 - -
Chmo14g00413 225 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 23 104 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 Pfam Transcription factor TFIID (or TATA-binding protein, TBP) 112 177 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 Gene3D - 26 178 IPR012295 -
Chmo14g00413 225 SUPERFAMILY TATA-box binding protein-like 21 114 - -
Chmo14g00413 225 PANTHER TATA-BOX BINDING PROTEIN 9 178 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)|GO:0006352(PANTHER)|GO:0016251(PANTHER)|GO:0140223(PANTHER)
Chmo14g00413 225 PRINTS Transcription initiation factor TFIID signature 49 68 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 PRINTS Transcription initiation factor TFIID signature 68 86 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 PRINTS Transcription initiation factor TFIID signature 25 40 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 PRINTS Transcription initiation factor TFIID signature 115 131 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 PRINTS Transcription initiation factor TFIID signature 140 155 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 PRINTS Transcription initiation factor TFIID signature 159 175 IPR000814 GO:0003677(InterPro)|GO:0006352(InterPro)
Chmo14g00413 225 Gene3D - 30 115 IPR012295 -
Chmo14g00413 225 SUPERFAMILY TATA-box binding protein-like 107 178 - -
Chmo14g00413 225 ProSitePatterns Transcription factor TFIID repeat signature. 52 101 IPR030491 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00413 K03120 transcription initiation factor TFIID TATA-box-binding protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:17029457 Chmo23g04534 Chmo-Chr23:276078376 dispersed
Chmo Chmo-Chr1:115016413 Chmo14g00413 Chmo-Chr14:17029457 wgd
Chmo Chmo-Chr13:20030815 Chmo14g00413 Chmo-Chr14:17029457 wgd
Chmo Chmo-Chr14:17029457 Chmo15g00292 Chmo-Chr15:15360171 wgd
Chmo Chmo-Chr14:17029457 Chmo2g02054 Chmo-Chr2:99558001 wgd
Chmo Chmo-Chr14:17029457 Chmo22g04613 Chmo-Chr22:285471282 wgd
Chmo Chmo-Chr14:17029457 Chmo24g04542 Chmo-Chr24:280346227 wgd
Chmo Chmo-Chr14:17029457 Chmo3g02317 Chmo-Chr3:111458330 wgd