AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo14g00521 | ATGGGTACTCTATTCAAAGCGAGCTTGTTCTTGTCGTTCCTGCTGTTTCTTCTCGCACCTACTGCTTATTCAGATGCTAATGGTCGATTGGTTAGAGTTGGGCTAAAGAAGAGGAAGATCAACCAATTGAACCAACTTGGACACGCGGGCTCAAAAGAAAGATATGCTGGAAGAAACTCTGGTATCCTTGGTAATATCAGGGACTCAGATAGTGACGCTATCGCTCTAACCAACTACATGGATGCTCAGTATTATGGTGAGATTGGTGTCGGTACTCCACCTCAAAAGTTCACCGTGATTTTTGATACTGGAAGTTCTAACCTTTGGGTGCCTTCAGCAAAATGCTACTTCTCAGTGGCTTGCCTATTCCACTCAAAGTATAAGTCTAGCCAATCAAATACTTATAAGAAAAATGGGAAATCTGCGGCAATTCAATATGGAACTGGCTCGATCTCAGGTTTCTTTAGCCAAGATTCTATCACACTTGGTGATCTTGTTGTCAACGAGCAGGATTTTATTGAGGCAACCAAAGAGCCTGGAGTAACTTTCTTGGCAGCGAAATTTGATGGTATTCTTGGCCTTGGGTTTCAAGAGATATCTGTTGGGGAAGCTGTTCCTGTTTGGTACAACATGGTGGAACAAGGTCTTGTTCAAGAACCTATTTTTTCATTTTGGCTTAATCGCAATGTCGAAGACAATGAAGGGGGTGAACTTGTGTTTGGTGGGATTGATGCTAATCATTTCAAGGGTGATCATACGTATGTCCCGGTAACTCAAAAAGGCTATTGGCAGTTCGACATGGGTGATGTCCTTATTGGTGATAACACAACTGGATTTTGCTCCGATGGTTGTGCAGCAATTGCTGACTCTGGAACCTCTTTGATAGCTGGTCCAACGGCAGTTATTACTCAAATCAATCAAGCCATTGGTGCTGCGGGTGTAATGAGCCAACAATGCAAGACAGTGGTCGATAATTATGGAAAGACTATTATTGAGATGCTCTTAACTGAGACACGGCCCGATAAAATCTGCTCTCAAATGAAGCTATGCACCTTAAATGGATCTCATGATACTGGCATGATCATTGAGAGCGTGGTTGACATGAACAATGGCAAATCTTCTGGTTTGCGTGATGAGATGTGTAACTATTGTGAGATGGCAGTTGGTTGGATGGAAAACCAGATCAAGAGGAACCAAAGTGAAAAAGATATAATTCACTATGCTGACCAGCTCTGCGAGAAGTTGCCAAGTCCAATGGGAGAATCTGGAGTTGACTGCAACAAAATTTCCTCCATGCCTAATATCGCTTTTACTATTGGTGGTAAAACGTTTGACCTCTCCCCTAAAGAGTATATCTTGAAAGTTGGTGAGGGAAAAGCAGCACAATGCATCAGTGGATTCACTGCTATGGATGTGGCACCTCCTCGTGGACCTCTCTGGATCCTGGGTGACATTTTCATGGGTAAATACCATACAGTATTCGACTATGGTAACTCACGAGTTGGATTTGCAGAAGCAGCTTAA | 1524 | 42.91 | MGTLFKASLFLSFLLFLLAPTAYSDANGRLVRVGLKKRKINQLNQLGHAGSKERYAGRNSGILGNIRDSDSDAIALTNYMDAQYYGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSVACLFHSKYKSSQSNTYKKNGKSAAIQYGTGSISGFFSQDSITLGDLVVNEQDFIEATKEPGVTFLAAKFDGILGLGFQEISVGEAVPVWYNMVEQGLVQEPIFSFWLNRNVEDNEGGELVFGGIDANHFKGDHTYVPVTQKGYWQFDMGDVLIGDNTTGFCSDGCAAIADSGTSLIAGPTAVITQINQAIGAAGVMSQQCKTVVDNYGKTIIEMLLTETRPDKICSQMKLCTLNGSHDTGMIIESVVDMNNGKSSGLRDEMCNYCEMAVGWMENQIKRNQSEKDIIHYADQLCEKLPSPMGESGVDCNKISSMPNIAFTIGGKTFDLSPKEYILKVGEGKAAQCISGFTAMDVAPPRGPLWILGDIFMGKYHTVFDYGNSRVGFAEAA | 507 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo14g00521 | 507 | ProSiteProfiles | Peptidase family A1 domain profile. | 84 | 504 | IPR033121 | - | |
| Chmo14g00521 | 507 | SMART | sapb-4 | 278 | 350 | IPR008139 | - | |
| Chmo14g00521 | 507 | SMART | sapb-4 | 379 | 463 | IPR008139 | - | |
| Chmo14g00521 | 507 | Pfam | Saposin-like type B, region 1 | 380 | 416 | IPR007856 | GO:0006629(InterPro) | |
| Chmo14g00521 | 507 | FunFam | Vacuolar aspartic proteinase | 398 | 506 | - | - | |
| Chmo14g00521 | 507 | Gene3D | Acid Proteases | 31 | 242 | IPR021109 | - | |
| Chmo14g00521 | 507 | Gene3D | Acid Proteases | 243 | 507 | IPR021109 | - | |
| Chmo14g00521 | 507 | SUPERFAMILY | Saposin | 315 | 416 | IPR011001 | - | |
| Chmo14g00521 | 507 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 99 | 110 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Chmo14g00521 | 507 | ProSiteProfiles | Saposin B type domain profile. | 314 | 354 | IPR008139 | - | |
| Chmo14g00521 | 507 | CDD | phytepsin | 74 | 505 | IPR033869 | GO:0004190(InterPro) | |
| Chmo14g00521 | 507 | SUPERFAMILY | Acid proteases | 10 | 506 | IPR021109 | - | |
| Chmo14g00521 | 507 | FunFam | Lysosomal aspartic protease | 70 | 312 | - | - | |
| Chmo14g00521 | 507 | ProSiteProfiles | Saposin B type domain profile. | 377 | 418 | IPR008139 | - | |
| Chmo14g00521 | 507 | Pfam | Saposin-like type B, region 2 | 317 | 350 | IPR008138 | - | |
| Chmo14g00521 | 507 | PANTHER | BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED | 13 | 506 | IPR001461 | GO:0004190(InterPro)|GO:0004190(PANTHER)|GO:0006508(InterPro)|GO:0006508(PANTHER) | |
| Chmo14g00521 | 507 | Pfam | Eukaryotic aspartyl protease | 83 | 506 | IPR033121 | - | |
| Chmo14g00521 | 507 | ProSitePatterns | Eukaryotic and viral aspartyl proteases active site. | 286 | 297 | IPR001969 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Chmo14g00521 | 507 | Gene3D | - | 314 | 416 | - | - | |
| Chmo14g00521 | 507 | PRINTS | Pepsin (A1) aspartic protease family signature | 480 | 495 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Chmo14g00521 | 507 | PRINTS | Pepsin (A1) aspartic protease family signature | 90 | 110 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Chmo14g00521 | 507 | PRINTS | Pepsin (A1) aspartic protease family signature | 236 | 249 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) | |
| Chmo14g00521 | 507 | PRINTS | Pepsin (A1) aspartic protease family signature | 286 | 297 | IPR001461 | GO:0004190(InterPro)|GO:0006508(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo14g00521 | K08245 | phytepsin [EC:3.4.23.40] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr14:21416202 | Chmo14g01709 | Chmo-Chr14:102435589 | dispersed | |
| Chmo | Chmo-Chr13:24194999 | Chmo14g00521 | Chmo-Chr14:21416202 | wgd | |
| Chmo | Chmo-Chr14:21416202 | Chmo15g00381 | Chmo-Chr15:19694361 | wgd | |
| Chmo | Chmo-Chr14:21416202 | Chmo22g04679 | Chmo-Chr22:287558126 | wgd | |
| Chmo | Chmo-Chr14:21416202 | Chmo23g04632 | Chmo-Chr23:279558177 | wgd | |
| Chmo | Chmo-Chr14:21416202 | Chmo24g04623 | Chmo-Chr24:283057952 | wgd |