AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo14g00543 | ATGAACGAGTCGGACTCATCATCGTTTCCTCGTCTCAATGAGGTGGAGAAGATCATTGGATACGAATTCAAGAACAAAGAGTTATTAAAAGAAGCGTTTACTCATAATTCTTACAAAGATGACAATTGTCCATCGTACGAGCGGCTTGAATACCTTGGAGACTCGTTTTTGAACCATATAATTGCCAGAGAACACTTTTTTCTATATCCAAGGATGAAGTCTGGTGAGTTGACTCTGCTTCGCGCCGCCAATGTTGATACTGAGGCATTGGCTCGTGTTGCATTCAAACATGGCTTACATAGGTTTCTTAGGCACCAAGATCCTCTACTCGAGGGACGGGTACAAGAACTTATGGAAGGAATCAAACAGTATCCATTGCACTCCCATGGTTTAATCAATTCACCTAAGATACTTGCAGACATGGTGGAGTCTTTAATTGGTGCAGTCTATGTGGACACCAATTTATCGATCGATGCTACATGGGAGGTGGTGAAGAGCCTGTTACAACCTTTGACAACCCCAGAAAACCTCAAGCTAAACCCTGTGACAAAGTTGAATGAAACGTGCCAAAAGATCGGGATCAAGTTAGAATACAAAAATTTATGGGTCGAGTCGGGGGAGATTGAGATATATAATGGTAACGAGTTAATCGGGAAAGGAAACTACAAGAAGAAGAAAACGACAGCGAAGAACAAAGCAGCAGCCGATGCATACATGAATCTTGTCAAACAATTGGGTCTCAAAGATGATACAGAATTTGATGAATTATTACTTTAA | 777 | 41.06 | MNESDSSSFPRLNEVEKIIGYEFKNKELLKEAFTHNSYKDDNCPSYERLEYLGDSFLNHIIAREHFFLYPRMKSGELTLLRAANVDTEALARVAFKHGLHRFLRHQDPLLEGRVQELMEGIKQYPLHSHGLINSPKILADMVESLIGAVYVDTNLSIDATWEVVKSLLQPLTTPENLKLNPVTKLNETCQKIGIKLEYKNLWVESGEIEIYNGNELIGKGNYKKKKTTAKNKAAADAYMNLVKQLGLKDDTEFDELLL | 258 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo14g00543 | 258 | Pfam | Double-stranded RNA binding motif | 181 | 240 | IPR014720 | - | |
| Chmo14g00543 | 258 | Gene3D | Ribonuclease III domain | 9 | 175 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Chmo14g00543 | 258 | ProSiteProfiles | Ribonuclease III family domain profile. | 12 | 154 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Chmo14g00543 | 258 | FunFam | Endoribonuclease dicer-like 1 | 6 | 175 | - | - | |
| Chmo14g00543 | 258 | SUPERFAMILY | RNase III domain-like | 12 | 173 | IPR036389 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Chmo14g00543 | 258 | SMART | riboneu5 | 27 | 177 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Chmo14g00543 | 258 | Pfam | Ribonuclease III domain | 47 | 153 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Chmo14g00543 | 258 | ProSitePatterns | Ribonuclease III family signature. | 47 | 55 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Chmo14g00543 | 258 | CDD | RIBOc | 27 | 177 | IPR000999 | GO:0004525(InterPro)|GO:0006396(InterPro) | |
| Chmo14g00543 | 258 | SUPERFAMILY | dsRNA-binding domain-like | 136 | 241 | - | - | |
| Chmo14g00543 | 258 | PANTHER | DICER-RELATED | 12 | 244 | - | GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER) | |
| Chmo14g00543 | 258 | Gene3D | - | 176 | 244 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo14g00543 | - | - |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 213582 | Chmo14g00543 | Chmo15g00403 | |
| 225871 | Chmo13g00559 | Chmo14g00543 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Chmo | Chmo-Chr13:25257398 | Chmo14g00543 | Chmo-Chr14:22548517 | dispersed | |
| Chmo | Chmo-Chr13:25301891 | Chmo14g00543 | Chmo-Chr14:22548517 | dispersed | |
| Chmo | Chmo-Chr14:22548517 | Chmo15g00404 | Chmo-Chr15:20863823 | dispersed | |
| Chmo | Chmo-Chr14:22548517 | Chmo14g00544 | Chmo-Chr14:22561931 | tandem | |
| Chmo | Chmo-Chr1:107166643 | Chmo14g00543 | Chmo-Chr14:22548517 | wgd | |
| Chmo | Chmo-Chr13:25242109 | Chmo14g00543 | Chmo-Chr14:22548517 | wgd | |
| Chmo | Chmo-Chr14:22548517 | Chmo15g00403 | Chmo-Chr15:20840588 | wgd | |
| Chmo | Chmo-Chr14:22548517 | Chmo3g02465 | Chmo-Chr3:119716509 | wgd |