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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00548 ATGAAGCTATTGCCTAGTTTTCGAGACGTATCAAGTTCCGAAAAACATAGTTTGTTTATCAAGAAAATGAGTATGTGTTGTGTAGTGTTTGATTTTAACGACCCGTTAAAGAGTTTGAAAGAAAAAGATGTAAAGAAACAAACTTTACTTGAACTAGTTGAATATGTTTCTTCAGTAAGTTCCAAGTTTAATGAGGTTACAATTTTGGAGATAACGAAAATGGTGTCTGCTAATTTGTTTCGGTCATTACCTAACTTAAGTAATGAAAGTAAGTTGCCGGATATATATGATCAAGAAGATGACGAGTTTGTTATGGATCCTTCATGGCCACATCTTCAAGTTGTGTATGAGTTTTTGCTTAGGTTTGTGGCCTCATCAGAGACTGATGCTAAAATTGCGAAAAAGTATATAGATCAGTCGTTCGTGTTAAAATTGCTTGATCTTTTTGATTCTGAGGATCAAAGGGAAAGGGAGTATTTAAAGACGATTATGCATAGGATTTATGGCAAGTTTATGGTGCATCGGCCGTTTATTAGAAAAGCGATTAATAATATATTTTATCATTTTATTCTTGAGTCTGGTAAGCATAATGGGATAGCGGAAATACTTGAGCTTTTAGGTAGTAGTAATCAATGGATTTACGATGCCATTGAAGGAAGAACATAA 666 33.78 MKLLPSFRDVSSSEKHSLFIKKMSMCCVVFDFNDPLKSLKEKDVKKQTLLELVEYVSSVSSKFNEVTILEITKMVSANLFRSLPNLSNESKLPDIYDQEDDEFVMDPSWPHLQVVYEFLLRFVASSETDAKIAKKYIDQSFVLKLLDLFDSEDQREREYLKTIMHRIYGKFMVHRPFIRKAINNIFYHFILESGKHNGIAEILELLGSSNQWIYDAIEGRT 221
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00548 221 SUPERFAMILY ARM repeat 17 209 IPR016024 -
Chmo14g00548 221 FunFam Serine-threonine-protein phosphatase 2A 56 kDa regulatory subunit 6 217 - -
Chmo14g00548 221 Gene3D - 6 213 IPR011989 -
Chmo14g00548 221 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 4 209 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Chmo14g00548 221 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 3 208 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00548 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:22845327 Chmo15g00405 Chmo-Chr15:20941920 dispersed
Chmo Chmo-Chr13:25782679 Chmo14g00548 Chmo-Chr14:22845327 wgd