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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00590 ATGCCACCATTAAAAACCATATATCTAACCATCATATTCATTTTAATAATCCCATATCCAACAACTGGTGATCAATCCTATATCTCAATCTTAATAACCCAAAAGGGTCTTAATTTCACCAAAGATTTACTCATATCAAAAGCCTTATCATCACTTACTCCAACACCAATATCTGAAATTGTGAAAAATGTTAAGATACCTTTGATTGGTAAAGTGCATGTTGTTCTTAAAGATATTGGTATTAATGGGGTTCAAGTTGGGTCATCTGATGTTGTGCCTAGTGTTGGTGGTGTTGTGATTGTTGGTAATGGTGTTAGTTGTGAGTTGGAGGTCAAGTGGCATTATAGTTATGGGACTTGGGTTGGCCCGGTTTCGGTTTCGGATAGTGGGACTGCTTCTATTAAGGTTGATGGCATGGAAATCAAAGTAACACTAGACGTGGTGAATAAAGAAGGATCTATGAAACTTTCCATCGTGGAATGTAATTGTCATATAAATGATATCTCCATAGATTTAGATGGAGGAGCATCTTGGCTCTATCAAGGGATTGTGGATGCTTTTGAAGATGAAATACTCTCAGCAGTAGAAAAAGCAATTACCAAGACACTGAAAGCCGGAATTTCACACCTTGAATCAATGTTACAAACTCTTCCGAAACAAATCCCAGTGGATGATACTGCTTCATTAAATGTTACATTTGTTAACAACCCTTATACGAGCGACACTTCACTAGGCGTTGAGATAAATGGGTTGTTTATACAAAATAAAACCCACGCACATTCATACCACAATGGTTTGCAGCCACCAGTTTCTTGTTCAGAATCTTCAAAGATGATTGGAATTGCCTTAGATGAAGCTGTTTTTAAATCTGCATCTGCCTTATACTATAATGTGACTCCCCGAATCCTTATATCAGCTTTATTATAA 927 36.89 MPPLKTIYLTIIFILIIPYPTTGDQSYISILITQKGLNFTKDLLISKALSSLTPTPISEIVKNVKIPLIGKVHVVLKDIGINGVQVGSSDVVPSVGGVVIVGNGVSCELEVKWHYSYGTWVGPVSVSDSGTASIKVDGMEIKVTLDVVNKEGSMKLSIVECNCHINDISIDLDGGASWLYQGIVDAFEDEILSAVEKAITKTLKAGISHLESMLQTLPKQIPVDDTASLNVTFVNNPYTSDTSLGVEINGLFIQNKTHAHSYHNGLQPPVSCSESSKMIGIALDEAVFKSASALYYNVTPRILISALL 308
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00590 308 SMART bpi1-3 32 257 IPR017942 GO:0008289(InterPro)
Chmo14g00590 308 Gene3D - 41 221 - -
Chmo14g00590 308 PANTHER OS06G0309200 PROTEIN 9 297 IPR045897 -
Chmo14g00590 308 Pfam LBP - BPI - CETP family, N-terminal domain 36 210 IPR017942 GO:0008289(InterPro)
Chmo14g00590 308 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 29 240 IPR017943 GO:0008289(InterPro)
Chmo14g00590 308 FunFam phospholipid transfer protein-like 35 215 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00590 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213596 Chmo14g00590 Chmo15g00452
225881 Chmo13g00612 Chmo14g00590
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:25559977 Chmo15g00452 Chmo-Chr15:23433827 dispersed
Chmo Chmo-Chr14:25559977 Chmo13g00612 Chmo-Chr13:27596035 transposed