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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00603 ATGTCGTTGACCGTTGAAGCTGTTTCTGGTTGTTCCAAGGACATGGGGTTCGAAGAAAACAAGGAACAAGGCAAAGAAAGTATTAAAAGAAGTGGGAGTGAATCTTCATTTTGTGAAAGTGAAAATGAAGGAGATGAAGTTGAAGATATTAAAGTTGAATTGGGTCCTCAATGCACCCTTAAAGATCAACTTGAGAAGGATAAGGATGATGAGAGTCTGAGAAAGTGGAAAGAACAACTACTTGGGAATGTTGATATTAATGATGTTGGAGAATCATTAGAACCAGAAGTGAAGATCCTCAGTCTTTCAATACTGTCCCCAGGAAGATCCGACATTGTTCTTGCAATACCCACAGATGGAAAACCTAAAGGCTCATGGTTTACACTGAAAGAAGGTTCTCGTTACAGCCTCAGGTTCTCCTTTCAAGTTAAACATAACATTGTTTCCGGTTTAAAGTACACCAACAATGTATGGAAAACTGGTGTCAAGGTGGATAACGCGAAACAGATGCTTGGTACTTTTAGTCCACAGCAAGAAGCATACACATATGATATGCCTGAGGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAAACTAAGGTAATTTTATGA 627 39.23 MSLTVEAVSGCSKDMGFEENKEQGKESIKRSGSESSFCESENEGDEVEDIKVELGPQCTLKDQLEKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILSLSILSPGRSDIVLAIPTDGKPKGSWFTLKEGSRYSLRFSFQVKHNIVSGLKYTNNVWKTGVKVDNAKQMLGTFSPQQEAYTYDMPEETTPSGYFARGSYSAKTKVIL 208
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00603 208 PANTHER RHO GDP-DISSOCIATION INHIBITOR 31 206 IPR000406 GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER)
Chmo14g00603 208 SUPERFAMILY E set domains 41 206 IPR014756 -
Chmo14g00603 208 MobiDBLite consensus disorder prediction 15 29 - -
Chmo14g00603 208 FunFam Rho GDP-dissociation inhibitor 1 50 208 - -
Chmo14g00603 208 MobiDBLite consensus disorder prediction 1 50 - -
Chmo14g00603 208 PRINTS RHO protein GDP dissociation inhibitor signature 180 192 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Chmo14g00603 208 PRINTS RHO protein GDP dissociation inhibitor signature 147 163 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Chmo14g00603 208 PRINTS RHO protein GDP dissociation inhibitor signature 164 179 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Chmo14g00603 208 Pfam RHO protein GDP dissociation inhibitor 41 207 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Chmo14g00603 208 Gene3D Coagulation Factor XIII, subunit A, domain 1 50 207 IPR024792 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00603 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
48022 Chmo14g00603 Chmo23g04698
48023 Chmo14g00603 Chmo24g04702
213603 Chmo14g00603 Chmo15g00479
225885 Chmo13g00644 Chmo14g00603
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:27161566 Chmo16g00873 Chmo-Chr16:37389239 dispersed
Chmo Chmo-Chr13:29966677 Chmo14g00603 Chmo-Chr14:27161566 wgd
Chmo Chmo-Chr14:27161566 Chmo15g00479 Chmo-Chr15:25069428 wgd
Chmo Chmo-Chr14:27161566 Chmo22g04706 Chmo-Chr22:288446186 wgd
Chmo Chmo-Chr14:27161566 Chmo23g04698 Chmo-Chr23:281831082 wgd
Chmo Chmo-Chr14:27161566 Chmo24g04702 Chmo-Chr24:286071218 wgd