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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00624 ATGGACCTTCATTCTATGGGAAGGCAAGGTGGTAACAACTCGATGGGGGTAAGTAATGGTGGTAGTGCTTCGTCTATAGCTCTCCTGCAAGAAAGATTCAACCAGCTGCAGAAGATGAAAGAAAAGAGACGTGAGACTGAGCTTTTAAAGTTGTTCCCTGAGCATGAAACAAAGGGTCAAACTAACCTTTATGTACCACCAGCAACAAGACCATCTTTACGAGATTCTGTCTCTCTTGGACTCGACTTATACACAAAGAAAGCAGAACCGCAAAAACCTGGAAAAGGCCCACAGGTTATGGACTTTTGGTCTGTTAATGACAAACCTGAAGTCGACACGTCTCTTCATTTGTAG 354 43.5 MDLHSMGRQGGNNSMGVSNGGSASSIALLQERFNQLQKMKEKRRETELLKLFPEHETKGQTNLYVPPATRPSLRDSVSLGLDLYTKKAEPQKPGKGPQVMDFWSVNDKPEVDTSLHL 117
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00624 117 PANTHER OS03G0593100 PROTEIN 6 117 - -
Chmo14g00624 117 Coils Coil 26 46 - -
Chmo14g00624 117 MobiDBLite consensus disorder prediction 1 22 - -
Chmo14g00624 117 MobiDBLite consensus disorder prediction 7 22 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00624 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213610 Chmo14g00624 Chmo15g00508
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:27917485 Chmo1g02226 Chmo-Chr1:110404643 dispersed
Chmo Chmo-Chr15:26513689 Chmo14g00624 Chmo-Chr14:27917485 transposed
Chmo Chmo-Chr14:27917485 Chmo15g00494 Chmo-Chr15:25793813 wgd