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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00650 ATGCAACAAACAATGGCTGCTAAAATAACCATTTCATCCACTTCTTCATTAGCTACCAAGTTTCATATCCCACAAAAACCTTTATCATATCAATCCATATGTCCTCCTAGAACAACCCCAAATCATCGATTTAAACTTCAAGCTAGGCTAGGAGGGGAAGATGGAGAAGCCACTAAAGATGGGAAAAAGAAATTCATTACCAAAGAACAAGAACCCGAACAGTATTGGCAAACGGCTGGAGAAAGGGAAGGGGAGAATCCAATGAGTACGCCTCTTCCGTACATTATCCTAGGCGGCATGTCTACACCGTTTATCATCTTAGCCATTGCTTATTTCAACGGTTGGATCAAGGTGCCCATCCGTTGA 366 42.08 MQQTMAAKITISSTSSLATKFHIPQKPLSYQSICPPRTTPNHRFKLQARLGGEDGEATKDGKKKFITKEQEPEQYWQTAGEREGENPMSTPLPYIILGGMSTPFIILAIAYFNGWIKVPIR 121
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00650 121 PANTHER EXPRESSED PROTEIN 5 121 - GO:0009507(PANTHER)
Chmo14g00650 121 MobiDBLite consensus disorder prediction 49 87 - -
Chmo14g00650 121 MobiDBLite consensus disorder prediction 49 78 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00650 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213618 Chmo14g00650 Chmo15g00525
225891 Chmo13g00662 Chmo14g00650
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:28895028 Chmo2g03020 Chmo-Chr2:185286207 dispersed
Chmo Chmo-Chr13:30940213 Chmo14g00650 Chmo-Chr14:28895028 wgd
Chmo Chmo-Chr14:28895028 Chmo15g00525 Chmo-Chr15:27447162 wgd