AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00658 ATGGCAACAGACTTGGAAAGTTCATCAAAAATTCCAGAAAATGAAGGTTATCACATTGATATGCTAGATGCTTCTTTTGATAGTTATGGAGGAGTTATTGTGAACGTTAAAGAGGACATGGATGAAAATGTCTTTATCACTTTACTTCGAACATCATTATCTCAATGGCGGCAACAGGGAAAGAAGGGTGTTTGGCTTAAACTCACTATTGAACTTGTGAATCTTGTTAAGCCTGCAGTTCAGGAAGGATTTTGGTACCATCATGCTGAACCAACACATTTGATGCTCGTGTATTGGATTCCTAAGACAAATCATACCCTCCCACCAAATGCTTCACATCGAGTTGGTGTTGCTTCTTTTGTAGTCAACGATAAAGGGGAGCTTCTCGTAGTGCAAGAGAAAAGCGGAGTGTTCAAAGGCACGGGAGTCTGGAAGTTACCAACTGGTACTGTTGAGGAGGTCTGCAAGTTGTATTTTTTTCGTTACATTTTTTTCTTTTTAACAAAAAACCAAATTGATCAAGTACTCTGTTCGCAGGGTGAACATATATCTGTAGCTGCAATCAGGGAAGTGAAAGAAGAGGCTGGGATTGACACTGAATTCCTGGAAGTCCTTGCATTCAGGCAAAGCCATAAGTCATTTTTTAGCAAGTCCGATTTAATGTTTGTGTGTATGCTCAAACCAAAGTCTTCCGTTATCCAGAAACAAGATTCAGAAATTGAAGCAGCACAGTGGATGCCAGTGGAAGAATATGCCAACCAGCCCTTTGTAAAGAAGCACAAGTCATTCGATTACATTGCTAAAATATGCATGGCAAAAAAAGATAACAAATATGTTGGTTTTTCTGCATTGTCTAGAGCGACTGCTACATCGGCCAAGAAAAGCTATGTGTATTCCAGTTATCAAGAGGAGTAA 915 39.56 MATDLESSSKIPENEGYHIDMLDASFDSYGGVIVNVKEDMDENVFITLLRTSLSQWRQQGKKGVWLKLTIELVNLVKPAVQEGFWYHHAEPTHLMLVYWIPKTNHTLPPNASHRVGVASFVVNDKGELLVVQEKSGVFKGTGVWKLPTGTVEEVCKLYFFRYIFFFLTKNQIDQVLCSQGEHISVAAIREVKEEAGIDTEFLEVLAFRQSHKSFFSKSDLMFVCMLKPKSSVIQKQDSEIEAAQWMPVEEYANQPFVKKHKSFDYIAKICMAKKDNKYVGFSALSRATATSAKKSYVYSSYQEE 304
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00658 304 Pfam Nudix hydrolase domain 23 100 IPR040618 -
Chmo14g00658 304 SUPERFAMILY Nudix 81 270 IPR015797 -
Chmo14g00658 304 FunFam nudix hydrolase 2 19 105 - -
Chmo14g00658 304 PANTHER NUDIX HYDROLASE RELATED 11 301 IPR003293 GO:0035529(PANTHER)|GO:0047631(PANTHER)|GO:0051287(PANTHER)
Chmo14g00658 304 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 114 278 - -
Chmo14g00658 304 ProSiteProfiles Nudix hydrolase domain profile. 112 270 IPR000086 -
Chmo14g00658 304 Pfam NUDIX domain 113 262 IPR000086 -
Chmo14g00658 304 Gene3D - 19 104 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00658 K26956 ADP-ribose/NAD+ diphosphatase [EC:3.6.1.13 3.6.1.22]
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Event-related genes

Select Gene_1 Gene_2 Event_name
225894 Chmo13g00667 Chmo14g00658
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:29367291 Chmo15g00529 Chmo-Chr15:27528660 dispersed
Chmo Chmo-Chr14:29325117 Chmo14g00658 Chmo-Chr14:29367291 tandem
Chmo Chmo-Chr14:29367291 Chmo14g00659 Chmo-Chr14:29372732 tandem