AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00721 ATGAGATATGGAGGAGTTTTTGGATCTGTGGTTGTGGTTTTATTTTCTATGTATTTCAATCCATTGCGGCATAATCTCATCAATAAAACTTATCTATGTAGTCAGGATACTTGTAAATATTCAGGCATCATTGAGGACTGCTGTTGTGACTACGAGAGCGTTAACAATGTTAATGGAGCAATTTTACATCCCTTGTTGCAACAGCTTGTTACAACTCCCTTCTTCCGATATTTTAAGGTGAAGTTATGGTGTGATTGCCCCTTCTGGCCTGATGATGGAATGTGCCGTCTGCGTGATTGCAGTGTATGCGAGTGTCCAGAACATGAATTCCCAGAATCTTTTAAGAAACCATCACCGTATATTCTTCCAAAAGATGATCCTGTATGTCAAGAAGGAAAGCCGGAGGCTACAGTTGACCGTACTCTGGATGCTAAGTCTTTTAATGGCTGGGTTGAAATAGATAATCGATGGACTCATGATGATGAAACTGATAATGGTGAAATGACGTATGTGAACCTGCAATTGAACCCTGAACGTCATACGGGTTACACAGGGCCATCAGCAAGAAGAATATGGGATGCTATATACTCAGAATATTGTCCAAGATATGCATATGGAGAGACGTGCCCTGAAAAGAAAGTACTATACAAGCTAATATCTGGTTTGCACTCCTCAATTTCTATCCATATAGGTGCAGATTATCTACTTGACGAGAGTAGCTATAAGTGGGGTCCAAATCCTGAATTGATGTATAATCGTGTCTTGAAACATCCTGATCGTGTGGAAAACTTGTACTTCACTTTCCTGTTTGTTCTTAGAGCTGTGATAAAAGCGGCTGCTTACCTGGATCAGGCCGAGTATGATTCTGGTAACCATGTGGAGGATCTTAGAGCCCAATCCTTAATTCGACAAATGGTTCACAATTCTGAACTGCAAGCTGCATGTGCTCTTCCATTTGATGAGGCTGAGCTGTGGCAAGGCCAAGGTGGACCCATACTCAGGCAACAGATCCAAAATCAGTTTCGAAACATCAGTGCACTAATGGACTGTGTAGGATGTGAGAAGTGTCGTCTTTGGGGAAAACTTCAAGTTCTTGGTCTTGGAACTGCATTGAAGATTCTGTTCTCTGTCGATGATCAGAGTAACCCGGACCCACATCTGCAGTTACAAAGAAATGAAGTGATTGCTTTAATTAATCTACTAAATCGGCTATCAGAATCCCTTATATATGTTACTACAATAAAACTACCCACTACAGATATCAGTTTGATTAACCAAGCTTGGGGAGTGATGGCTCCTTGGTGGAAGAACCTGTCAAAAGCTAACTGA 1329 41.23 MRYGGVFGSVVVVLFSMYFNPLRHNLINKTYLCSQDTCKYSGIIEDCCCDYESVNNVNGAILHPLLQQLVTTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPEHEFPESFKKPSPYILPKDDPVCQEGKPEATVDRTLDAKSFNGWVEIDNRWTHDDETDNGEMTYVNLQLNPERHTGYTGPSARRIWDAIYSEYCPRYAYGETCPEKKVLYKLISGLHSSISIHIGADYLLDESSYKWGPNPELMYNRVLKHPDRVENLYFTFLFVLRAVIKAAAYLDQAEYDSGNHVEDLRAQSLIRQMVHNSELQAACALPFDEAELWQGQGGPILRQQIQNQFRNISALMDCVGCEKCRLWGKLQVLGLGTALKILFSVDDQSNPDPHLQLQRNEVIALINLLNRLSESLIYVTTIKLPTTDISLINQAWGVMAPWWKNLSKAN 442
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00721 442 PIRSF ERO 7 439 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
Chmo14g00721 442 SUPERFAMILY ERO1-like 49 416 IPR037192 -
Chmo14g00721 442 PANTHER ERO1-RELATED 27 415 IPR007266 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0015035(InterPro)|GO:0015035(PANTHER)|GO:0016972(InterPro)|GO:0034975(PANTHER)|GO:0034975(InterPro)|GO:0071949(InterPro)
Chmo14g00721 442 Pfam Endoplasmic Reticulum Oxidoreductin 1 (ERO1) 62 409 IPR007266 GO:0005783(InterPro)|GO:0015035(InterPro)|GO:0016972(InterPro)|GO:0034975(InterPro)|GO:0071949(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00721 K10950 ERO1-like protein alpha [EC:1.8.4.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
48050 Chmo14g00721 Chmo22g04857
48051 Chmo14g00721 Chmo23g04808
48052 Chmo14g00721 Chmo24g04818
213646 Chmo14g00721 Chmo15g00604
225917 Chmo13g00731 Chmo14g00721
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:32916922 Chmo24g01434 Chmo-Chr24:83691985 dispersed
Chmo Chmo-Chr1:40592967 Chmo14g00721 Chmo-Chr14:32916922 transposed
Chmo Chmo-Chr13:34819425 Chmo14g00721 Chmo-Chr14:32916922 wgd
Chmo Chmo-Chr14:32916922 Chmo15g00604 Chmo-Chr15:32005621 wgd
Chmo Chmo-Chr14:32916922 Chmo22g04857 Chmo-Chr22:293655845 wgd
Chmo Chmo-Chr14:32916922 Chmo23g04808 Chmo-Chr23:286054727 wgd
Chmo Chmo-Chr14:32916922 Chmo24g04818 Chmo-Chr24:289608385 wgd