AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00754 ATGGCTACTTCTTCGCTCTCGTTTATTCTCTTATCTTTATTCATATCATTCTCAATATCGAATGCCATTGTTCCTTCGAATGAGACCTTCCGATATGTCAACGAAGGTGATTTTGGAGAATTCCAACTTGAGTCTGAATACACCCCAACCTATCGTCCCCTTGATCCATTTACCCTCCCTTTTCAGCTTTGTTTCTACAACACCACCCCAAATGCCTATTATCTTGGTCTTCGTATGGGGACAAGACGTGATAGATCTCTCATGCGATGGGTCTGGGAAGCCAACCGTGGCTCTCCAGTACGAAAAAATGCCACGTTTTCATTAGGTTCTGATGGAAACCTAATTTTGGCTGAATCAACAGGCCAGGTCGTATGGCAAACCAACACCGCCAATAAAGGCGTTGTTGGTTTTGCCTTAGAGTCAGATGGTAACACTGTGCTGAAAGACTCAAGTGGCAACTTCGTATGGCAGAGTTTTGACTCACCTACCGACACTCTCTTGGTAGGCCAAACTTTACGAGTTAACGGAGGCCCTTTCAAGCTCGTGAGTAGGGATTCAATCACTAACAACATTAACGGAGCGTATAGTTTCGTAATAGAGCCTAAAAGACTGGCTTTGTATTATAAGAACAGCATGCGTTATTGGTCATCCACCTTCCCTGAATTAAACCGAGCAAATGTGACTTTAGTTAATGCAACGTTACGCATCGCAGAAACCGACTATGAAGAGAACAATTTTCACGTTCTTTGGTGTCGTCTAGAGAACGCTCGAGACTTTGAGCAACCGTTATTGCCGTTGGGAACGATTCGATACAATAGCTCGTTATCGTATCTTCGACTAGGCATCGATGGGAACCTAAGACTCTACACGTATCGAGCAAATGTGCGGGGAAACGCGTGGGCGTTATTGTTCACTTTGTTTGATAGAGGTGTAAGAACCAGTAGGGGGTATCCGGAAGACGAATGTCAATTACCAAGTCGATGCGGAAAATTTGGGCTTTGCGAGGAAAGCCAGTGTGTTGGGTGTCCTACCCCCAACGGTGTGTTTGCGTGGAGCAAGGATTGCGATGTTAAGTTGCCTAGCTGTAATGCGAGTAGTTTCAAATATTACGAGCTTAAAGGGGCTGATCATTTCACGGTTAAGTATACATCCGGTACTAAATCTAGCTTGGATAGTTGCAAGAACAAATGCACGAAGGATTGTAAGTGTATGGGGTATTTTTATCACACCGATCGGTCGAAGTGTTGGACAGTTAACGAGCTGAAGACGTTTACAAGAACCGGGAACTCGACATCTTTGGCGTACATCAAAACGCCCTTGAACATTATTCATAATGCTGAATCAACCCACCCTCATGATATGGAGGGGGCCAACCCAGAGCGATGGTCGGTTGTCTGA 1398 44.85 MATSSLSFILLSLFISFSISNAIVPSNETFRYVNEGDFGEFQLESEYTPTYRPLDPFTLPFQLCFYNTTPNAYYLGLRMGTRRDRSLMRWVWEANRGSPVRKNATFSLGSDGNLILAESTGQVVWQTNTANKGVVGFALESDGNTVLKDSSGNFVWQSFDSPTDTLLVGQTLRVNGGPFKLVSRDSITNNINGAYSFVIEPKRLALYYKNSMRYWSSTFPELNRANVTLVNATLRIAETDYEENNFHVLWCRLENARDFEQPLLPLGTIRYNSSLSYLRLGIDGNLRLYTYRANVRGNAWALLFTLFDRGVRTSRGYPEDECQLPSRCGKFGLCEESQCVGCPTPNGVFAWSKDCDVKLPSCNASSFKYYELKGADHFTVKYTSGTKSSLDSCKNKCTKDCKCMGYFYHTDRSKCWTVNELKTFTRTGNSTSLAYIKTPLNIIHNAESTHPHDMEGANPERWSVV 465
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00754 465 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 61 445 IPR051343 -
Chmo14g00754 465 SMART blect-4 45 162 IPR001480 -
Chmo14g00754 465 ProSiteProfiles PAN-Apple domain profile. 362 439 IPR003609 -
Chmo14g00754 465 CDD B-lectin 45 162 IPR001480 -
Chmo14g00754 465 ProSiteProfiles Bulb-type lectin domain profile. 39 160 IPR001480 -
Chmo14g00754 465 PIRSF SLG 1 452 IPR035446 -
Chmo14g00754 465 Gene3D Hepatocyte Growth Factor 368 450 - -
Chmo14g00754 465 Pfam D-mannose binding lectin 91 175 IPR001480 -
Chmo14g00754 465 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 216 IPR036426 -
Chmo14g00754 465 CDD PAN-AP-plant 361 439 - -
Chmo14g00754 465 Gene3D - 60 161 IPR036426 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00754 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr13:41112298 Chmo14g00754 Chmo-Chr14:34403456 dispersed
Chmo Chmo-Chr14:34403456 Chmo15g00721 Chmo-Chr15:40552522 dispersed
Chmo Chmo-Chr14:34325927 Chmo14g00754 Chmo-Chr14:34403456 tandem