AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00930 ATGGTGAAGACAACGTTAGGATGTGAACCTGTTGTTGGGTCTTTAACGCCGTCAAGAAAGAGGGATTATAGGGTCACTAATAGGCTACAAGAAGGCAAACGTCCTATATACGCTGTCGTTTTCAACTTCATTGATTCTCGTTATTTTAACGTCTTTGCTACTGTTGGTGGTAATCGTGTCACAGTGTACCAATGCCTTGAAGGTGGCGTTATTGCTGTACTTCAGTCCTACATCGATGAAGATAAGGATGAGTCTTTCTACACTGTGAGCTGGGCATGTGATGCTGACGGGCGACCATTGCTAGTTGCTGGAGGAATTAATGGTATAATCCGTGTCATTGATGCTGGAAATGAGAAGATACACAAGAGTTTCGTTGGTCACGGGGACTCGGTAAATGAAATCAGAACACAAGTACTAAGACCTTCTCTTGTGCTTTCTGCAAGTAAAGATGAATCTGTCCGTTTGTGGAATGTTGAAACTGGAATATGCATTTTGATATTTGCTGGAGCTGGTGGTCATCGCAATGAAGTGTTGAGTGTGGATTTTCATCCTTCAGATATATATCGTATTGCCAGTTGTGGTATGGATAACACCGTAAAGATATGGTCAATGAAAGAATTTTGGACGTATGTCGAGAGGTCTTTTACATGGGAGGGACTACCTTCACAATTTCCTACAAAATATGTGCAGTTTCCGGTCTTACTTGCTTCAATCCATACAAATTATGTCGACTGCAATAGGTGGCTTGGCGATTTCATGCTATCTAAGAGCGTTGATAACGAGTTCATATTATGGGAACCAAAGATGAAAGAGCACTCCCCAGGAGAGGGTACTGTAGATATCATTCAAAAATATCCCGTCCCTGAGTGTGACATTTGGTTTATTAAGCTTTCATGTGATTTCCATTTCAACGCAGCATCTATAGGGAACAGGGAAGGGAAAATCTTTGTATGGGAATTGCAGAGTAGCCCCCCTACTCTCATTGCAAGGTTATCTCATGTTCAATCCAAATCTCCCATCAGGCAAACTGCTATGTCGTTTGATGGAAGCACAATTCTTAGTTGCTGTGAAGATGGCACTATTTGGCGTTGGGATACAGTTGCAACCTCCTAG 1113 42.14 MVKTTLGCEPVVGSLTPSRKRDYRVTNRLQEGKRPIYAVVFNFIDSRYFNVFATVGGNRVTVYQCLEGGVIAVLQSYIDEDKDESFYTVSWACDADGRPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRTQVLRPSLVLSASKDESVRLWNVETGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVERSFTWEGLPSQFPTKYVQFPVLLASIHTNYVDCNRWLGDFMLSKSVDNEFILWEPKMKEHSPGEGTVDIIQKYPVPECDIWFIKLSCDFHFNAASIGNREGKIFVWELQSSPPTLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVATS 370
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00930 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 205 - -
Chmo14g00930 370 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 Pfam WD domain, G-beta repeat 122 157 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 Pfam WD domain, G-beta repeat 333 365 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 SUPERFAMILY WD40 repeat-like 26 365 IPR036322 GO:0005515(InterPro)
Chmo14g00930 370 Gene3D - 19 368 IPR015943 GO:0005515(InterPro)
Chmo14g00930 370 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 161 - -
Chmo14g00930 370 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Chmo14g00930 370 PRINTS G protein beta WD-40 repeat signature 352 366 IPR020472 -
Chmo14g00930 370 PRINTS G protein beta WD-40 repeat signature 144 158 IPR020472 -
Chmo14g00930 370 SMART WD40-4 324 365 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 SMART WD40-4 160 203 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 SMART WD40-4 67 114 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 SMART WD40-4 117 157 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 205 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 166 IPR001680 GO:0005515(InterPro)
Chmo14g00930 370 FunFam polycomb group protein FIE1 19 368 - -
Chmo14g00930 370 PANTHER POLYCOMB PROTEIN 8 366 IPR051243 GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER)
Chmo14g00930 370 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00930 K11462 polycomb protein EED
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
213694 Chmo14g00930 Chmo15g00867
216463 Chmo13g00990 Chmo14g00930
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1305761 Chmo Chmo14g00930 Chmo-Chr14:46362536 Chmo24g03751 Chmo-Chr24:250370380
1455892 Chmo Chmo13g03513 Chmo-Chr13:259847812 Chmo14g00930 Chmo-Chr14:46362536
1493243 Chmo Chmo13g00990 Chmo-Chr13:51926643 Chmo14g00930 Chmo-Chr14:46362536
1500057 Chmo Chmo14g00930 Chmo-Chr14:46362536 Chmo15g00867 Chmo-Chr15:49913868