AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00964 ATGATATGGCTCTCGTACATCTTTGAACAGTTGAGGATATGGATGCTGAGTTTGAAACCATTGAGGCACGATTGCAGTCTTTCGATTAGTCAATTCCAGTCAGAAGTAGGTGTGCTTGATAGAATCGTCCACAAATATAAGAACCAGCATCGCAGAAGCTCATATTTTCAGTACTTGTTGAAGGTGAGGAGAGACTGTAAGCTTCTTCAGTCAACTAACTTGGTGGAACTTGTTAACTCGTCGTTTCTTGTCATTAATGGAAATCGACCTAAGCAAAAGGTGCAGCTTTTGGAAAGTTTGAAGAGAAGAAAATGTGATGGAGGCAAACATAATTTTCTGGGGCGAATTCAGGGTGCCGCACGTCTACTTTCACAGATGGTTGAGCCGATGCTTAAGGCAGCTATAGAGATATCTACCTTGCTTGCTCGATCCTTTTTTATGGGATTTTCTATGACTGTGCTGGCTCTGCTTGCACGCCTTCGAGTTTTGACACAACAAATATTACTTGATGTTGTGTCAGCATTCAACATGGTTTCCTCTCTATCTCGTAAACAGCAGTCCATCAAACTGAACCAAGAAGGAATCGAGGTTTTTAGAGAGTATTACCCAACAAATGAGCACACTGTCTTTTTGGAGTGTGTGTGGGAAACTGATAAATTCATTTTACTTGAGAGGAAGAGTGAACCCGAGAACAAAAATCCAGATACAATAAAGGAAGATGTCATATGTCGAGGTTCATCTACAGTAGAGTATCAAAGCGTCGAAACTATTCTTGGAGAACATAAACCCATGGATATTGTAATGGAGAAGTCTTCTGAAGAAGACGTTACTACCATCAAAACAGACGATCTTTCTTCACTGGATGGTATTACTAATGATCGCAAGCAAGTTGAAGCACCAAACAATGCCAAAGACCGGTCGGGTTTATTAGAGTCTTCCAGCAAGAACCTAGAACACGAACATCTTATGGGTTCAGATTTGGCGGTTTCATCAAGTCCCCCCAAATCTAAACCCGGACCGAAAAAGAAAGTGGCCTTCATATCAGTGAAGAGACCCGAACCTTCAAAAGCTAATGATGCAGGGCCTATTATTAAGCCGAGTGATGGGGTCAATGGCGAGAAAGAAGATCCATTCTTTAGTTTGCTCACTGGGGGAAGCCATAAGCATAGTCTTTTTTGA 1179 41.65 MIWLSYIFEQLRIWMLSLKPLRHDCSLSISQFQSEVGVLDRIVHKYKNQHRRSSYFQYLLKVRRDCKLLQSTNLVELVNSSFLVINGNRPKQKVQLLESLKRRKCDGGKHNFLGRIQGAARLLSQMVEPMLKAAIEISTLLARSFFMGFSMTVLALLARLRVLTQQILLDVVSAFNMVSSLSRKQQSIKLNQEGIEVFREYYPTNEHTVFLECVWETDKFILLERKSEPENKNPDTIKEDVICRGSSTVEYQSVETILGEHKPMDIVMEKSSEEDVTTIKTDDLSSLDGITNDRKQVEAPNNAKDRSGLLESSSKNLEHEHLMGSDLAVSSSPPKSKPGPKKKVAFISVKRPEPSKANDAGPIIKPSDGVNGEKEDPFFSLLTGGSHKHSLF 392
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00964 392 MobiDBLite consensus disorder prediction 324 392 - -
Chmo14g00964 392 Pfam Nucleolus and neural progenitor protein, N-terminal 25 176 IPR027951 -
Chmo14g00964 392 MobiDBLite consensus disorder prediction 282 297 - -
Chmo14g00964 392 MobiDBLite consensus disorder prediction 270 309 - -
Chmo14g00964 392 PANTHER OS09G0504900 PROTEIN 29 392 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00964 K27075 nucleolus and neural progenitor protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
213711 Chmo14g00964 Chmo15g00899
216484 Chmo13g01022 Chmo14g00964
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1305792 Chmo Chmo14g00964 Chmo-Chr14:47770570 Chmo21g02862 Chmo-Chr21:181553525
1493263 Chmo Chmo13g01022 Chmo-Chr13:53427983 Chmo14g00964 Chmo-Chr14:47770570
1500074 Chmo Chmo14g00964 Chmo-Chr14:47770570 Chmo15g00899 Chmo-Chr15:51538476