AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chmo14g00971 | ATGAAAGAACAGCTTTCCACTTTTCGTTCTCAGTTAGAAGACTTTGCTCGTAAACATAAGAATGACATTCGCAAGAACCCTGCTTTCAGATCACAGTTTCATGAGATGTGTGCGAAAGTTGGAGTAGATCCGCTAGCGTCAAATAAAGGTTTTTGGGCCGAGCTATTAGGGATTGGTGATTTCTATTATGAACTTGGGGTGCAAATTGTTGATATATGCTTAGCCACTAGACCCCATAACGGGGGTTTGATCAATTTGGAGGAACTCTGCAAGGTTCTTAGTCAGAGACGTAAGGGTGCTCGTGAGGCAGTTTCTGAAGACGATTGTTTGCGTGCAATTGGTAAACTGAAGGTGTTAGGGAGTGGTTTTGAAGTGATAACTGTTGGTAAAAGAAAGCTTGTTCGGTCTGTCCCGACTGAATTGAAGAAAGATCACAATGAAATTCTAGAGCTGTCCCAGGCTCAAGGTTTTGTGACAGTTGAAGAAGTAGAGAGACGTCTATCGTGGTCCACTGGTCGTGCCACTGATGCCCTTGAAACTTTACTAGACGAGGGCCTTGCGATGATTGATGATGGACATAGAGATGGAAAACGCCGTTATTGGTTCCCTTGTGTGTCTTCAATCTCCTCCTTTGTGGCATCTTAG | 645 | 43.88 | MKEQLSTFRSQLEDFARKHKNDIRKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPHNGGLINLEELCKVLSQRRKGAREAVSEDDCLRAIGKLKVLGSGFEVITVGKRKLVRSVPTELKKDHNEILELSQAQGFVTVEEVERRLSWSTGRATDALETLLDEGLAMIDDGHRDGKRRYWFPCVSSISSFVAS | 214 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chmo14g00971 | 214 | Gene3D | - | 57 | 137 | IPR036388 | - | |
| Chmo14g00971 | 214 | FunFam | Vacuolar protein sorting-associated protein | 138 | 214 | - | - | |
| Chmo14g00971 | 214 | FunFam | Vacuolar-sorting protein SNF8 | 57 | 137 | - | - | |
| Chmo14g00971 | 214 | PIRSF | ESCRT2-Vps22 | 1 | 211 | IPR016689 | GO:0000814(InterPro)|GO:0071985(InterPro) | |
| Chmo14g00971 | 214 | SUPERFAMILY | Winged helix DNA-binding domain | 141 | 205 | IPR036390 | - | |
| Chmo14g00971 | 214 | Coils | Coil | 83 | 103 | - | - | |
| Chmo14g00971 | 214 | Pfam | EAP30-Vps36 family | 1 | 191 | IPR040608 | - | |
| Chmo14g00971 | 214 | Gene3D | - | 1 | 51 | - | - | |
| Chmo14g00971 | 214 | SUPERFAMILY | Winged helix DNA-binding domain | 1 | 140 | IPR036390 | - | |
| Chmo14g00971 | 214 | Gene3D | - | 138 | 213 | IPR036388 | - | |
| Chmo14g00971 | 214 | PANTHER | EAP30 SUBUNIT OF ELL COMPLEX | 1 | 209 | IPR016689 | GO:0000814(PANTHER)|GO:0000814(InterPro)|GO:0043328(PANTHER)|GO:0071985(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chmo14g00971 | K12188 | ESCRT-II complex subunit VPS22 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 213714 | Chmo14g00971 | Chmo15g00904 | |
| 216487 | Chmo13g01034 | Chmo14g00971 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 1305797 | Chmo | Chmo14g00971 | Chmo-Chr14:48392338 | Chmo18g00828 | Chmo-Chr18:35330470 | |
| 1493269 | Chmo | Chmo13g01034 | Chmo-Chr13:53850186 | Chmo14g00971 | Chmo-Chr14:48392338 | |
| 1500079 | Chmo | Chmo14g00971 | Chmo-Chr14:48392338 | Chmo15g00904 | Chmo-Chr15:52475196 |