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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g00974 ATGCATGATTTTTGCTTCACAATTCCATATGGAATGATAGTGTTGTGTGGTGGGATAATTGGGTATGTAAGGAAAGGCAGTACGACGTCGTTAGCTGGCGGTGTTGGCACTGGATTGTTGCTTTTCTTTGCTTCTTATTTGACTTTATCTGCTTTTCATAAGAAAAAGAATTCATGGTTTGGCTTGCTTCTTGAAACTGTTATTGCTGCTACTCTCACATGGGTTATGGGACAAAGATTTGCCGAAACTTCCAAGATAATGCCTGCTGGTGTTGTTGCCGGTATCAGTGGAGTGATGACAGCATTTTATTTATACAAGATTGTCACTGGAGGCAACCATTTTCCAGCCAAAACTGAATGA 360 40.56 MHDFCFTIPYGMIVLCGGIIGYVRKGSTTSLAGGVGTGLLLFFASYLTLSAFHKKKNSWFGLLLETVIAATLTWVMGQRFAETSKIMPAGVVAGISGVMTAFYLYKIVTGGNHFPAKTE 119
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g00974 119 Pfam Transmembrane proteins 14C 6 103 IPR005349 GO:0016020(InterPro)
Chmo14g00974 119 Gene3D - 1 111 IPR044890 -
Chmo14g00974 119 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 108 IPR005349 GO:0009706(PANTHER)|GO:0015245(PANTHER)|GO:0015908(PANTHER)|GO:0016020(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g00974 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
213715 Chmo14g00974 Chmo15g00906
216488 Chmo13g01036 Chmo14g00974
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
1305800 Chmo Chmo14g00974 Chmo-Chr14:48439247 Chmo5g00666 Chmo-Chr5:33965172
1493271 Chmo Chmo13g01036 Chmo-Chr13:53870708 Chmo14g00974 Chmo-Chr14:48439247
1500081 Chmo Chmo14g00974 Chmo-Chr14:48439247 Chmo15g00906 Chmo-Chr15:52493813