AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chmo14g01030 ATGAGTAGTAATCCAGCTACTCCGATGAACGCGAACGCCCCCTCCTCAAGTGGATCTCCCGATCCAAACACTCCCAGGCGTAACTCTAAGCGACCTAAATATTCTAGGTTTACACAGCAGGAGCTTCCAGCTTGCAAACCGATTCTTACCCCCAAATGGGTGATATCAGCATTCATGCTTGTGACAATTGTCTTCATCCCAATAGGACTTGTTTCCCTATTCGCTTCTCGTGATGTTGTTGAGATTATTGACCGGTACGATAACGCCTGCCTAACAGGCTCAAAAAGTCAAAAGGTCCAAGCTATACAATCTGAAACTACCAATAAAACCTGTGTCAGAAGCTTAACAGTCACAAAGAAAATGAAGCAGCCTATCTACATCTATTATCAGCTTGATAACTTCTATCAGAATCATCGCAGGTACGTCAAGAGCCGAAGTGACACTCAGTTGAGAAACCGAGGTGACGAGAACGACACAAGTGCATGCAATCCTGAACATGAAGCAAATGGAATGCCGATTGTGCCCTGTGGTCTTGTAGCATGGAGTTTGTTTAATGACACTTATAGGTTCTCCACAAGTAACAGCCGAGAATTGCGTGTAAACAAGAGGCATATTTCATGGAAGAGTGACAGGGATGACAAGTTTGGCAGTGACGTCTTCCCGAATAATTTCCAGAATGGAACTCTTATTGGTGGTGGACGTCTCAATGAGTCTATACCTTTAAGTGAGCAAGAAGACCTAATCGTGTGGATGCGAACTGCGGCTCTTCCAACTTTTAGGAAGTTGTATGGGAAGATAGAAGAAGATATTGAGGCAGGCGAGACAATAAACGTGGTATTAGAGAACAGATACAACACATATAGTTTCAGTGGCAAGAAGAAACTCGTGCTTTCGACAACCAGCTGGCTTGGTGGAAAGAATAACTTTATTGGCATTGCATATCTTGCTGTTGGTGGCTTGTGCTTCCTACTAGCAACAACTTTCACCATCATATATTTGTTTAAGCCAAGGCATCTTGGAGATCCTAGTTATTTGTCATGGAACCGGAACCCAGGTGGTCACTGA 1065 43.76 MSSNPATPMNANAPSSSGSPDPNTPRRNSKRPKYSRFTQQELPACKPILTPKWVISAFMLVTIVFIPIGLVSLFASRDVVEIIDRYDNACLTGSKSQKVQAIQSETTNKTCVRSLTVTKKMKQPIYIYYQLDNFYQNHRRYVKSRSDTQLRNRGDENDTSACNPEHEANGMPIVPCGLVAWSLFNDTYRFSTSNSRELRVNKRHISWKSDRDDKFGSDVFPNNFQNGTLIGGGRLNESIPLSEQEDLIVWMRTAALPTFRKLYGKIEEDIEAGETINVVLENRYNTYSFSGKKKLVLSTTSWLGGKNNFIGIAYLAVGGLCFLLATTFTIIYLFKPRHLGDPSYLSWNRNPGGH 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chmo14g01030 354 MobiDBLite consensus disorder prediction 1 36 - -
Chmo14g01030 354 MobiDBLite consensus disorder prediction 145 162 - -
Chmo14g01030 354 PANTHER CELL CYCLE CONTROL PROTEIN 50 26 346 IPR005045 GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0005886(PANTHER)|GO:0016020(InterPro)
Chmo14g01030 354 Pfam LEM3 (ligand-effect modulator 3) family - CDC50 family 73 337 IPR005045 GO:0016020(InterPro)
Chmo14g01030 354 PIRSF Lem3-Cdc50 4 350 IPR005045 GO:0016020(InterPro)
Chmo14g01030 354 MobiDBLite consensus disorder prediction 1 25 - -
Chmo14g01030 354 MobiDBLite consensus disorder prediction 145 166 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chmo14g01030 K26935 cell cycle control protein 50
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Event-related genes

Select Gene_1 Gene_2 Event_name
48131 Chmo14g01030 Chmo22g05647
48132 Chmo14g01030 Chmo24g05760
48133 Chmo14g01030 Chmo24g05784
213739 Chmo14g01030 Chmo15g00976
216509 Chmo13g01110 Chmo14g01030
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Chmo Chmo-Chr14:51814509 Chmo24g05784 Chmo-Chr24:328179524 dispersed
Chmo Chmo-Chr13:57154521 Chmo14g01030 Chmo-Chr14:51814509 wgd
Chmo Chmo-Chr14:51814509 Chmo15g00976 Chmo-Chr15:56780925 wgd
Chmo Chmo-Chr14:51814509 Chmo22g05647 Chmo-Chr22:323455868 wgd
Chmo Chmo-Chr14:51814509 Chmo24g05760 Chmo-Chr24:326743964 wgd